Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq463 172 7e-38 seq2433 122 1e-22 seq1191 122 1e-22 >seq463 Length=3795 Score = 172 bits (190), Expect = 7e-38 Identities = 851/1335 (64%), Gaps = 35/1335 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||| | ||||| |||||||| || || || | ||| || | || || Sbjct 1987 TAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGAC 1928 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| | ||| ||| || | || | | | | ||| Sbjct 1927 GCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCC 1868 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATATCAAA 118354 || ||| ||||||||| || | ||| | || | || |||||| || || Sbjct 1867 TTCAGACTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTCGAA 1809 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||| ||||| || ||| || || |||| || ||||| || |||||||| ||| Sbjct 1808 CTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTT 1749 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 ||||| || |||||| | || ||| || || || || ||||| ||| || Sbjct 1748 CGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTT 1689 Query 118475 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 118534 || || ||||| | | || | || || ||| || || ||||||| || Sbjct 1688 CACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAG 1629 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG--GTCTCC 118592 || || || || | ||| | ||||| | | ||| || || | | ||| |||||| Sbjct 1628 GCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTG--CTGCGGCGCGCCGTCTCC 1571 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||| || | || || || |||| ||| |||| Sbjct 1570 ACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACG 1511 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 | ||| | || ||| | ||| |||| || || || | ||| || ||| Sbjct 1510 CTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCG 1451 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || || || || ||||| | |||||| || |||||||| | ||| || ||| Sbjct 1450 ATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTG 1391 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 |||| ||| || | || || ||||| | |||||| || || ||||| |||| |||||| Sbjct 1390 CACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCA 1331 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| || ||| | ||| |||||||| | || |||| || || || ||| Sbjct 1330 TCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATCGCGAACCAC 1271 Query 118893 ACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || | | || |||| | || | | || || || | |||||| ||| || Sbjct 1270 ACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTACAG 1212 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-GGGCAGAAGA 119010 | ||||||||| || || | || ||||| || || | || || | | Sbjct 1211 GCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCGGATCCATCA 1153 Query 119011 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 | | ||| ||| || | ||| || || ||||||||||| |||||||||||||| | ||| Sbjct 1152 GCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAACGCG 1094 Query 119070 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | ||||| || || ||| ||| || || | || ||| | || | ||| | Sbjct 1093 TAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGA 1036 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 || | | ||| || ||||||||||| || |||||||| |||| | ||||| || || Sbjct 1035 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 976 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| || || | |||||| ||| || || || ||||| || | | | Sbjct 975 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 916 Query 119245 CATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| || ||| || || || ||| || | | || | || | ||| | Sbjct 915 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 858 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 ||||| ||||| || || ||| ||| ||| ||||||||| | || | |||| Sbjct 857 GTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTA 798 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGAGG 119419 || || ||||| ||| |||| |||| | ||||| |||| ||| || || Sbjct 797 AATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGG 741 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 119479 | | || || || ||||||||||| || || || ||||| |||| | || | ||||| Sbjct 740 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACAT 681 Query 119480 CTTGTCGTAGGTCTC 119494 | |||||||||||| Sbjct 680 CAAGTCGTAGGTCTC 666 >seq2433 Length=14949 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 277 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 336 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 337 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 394 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 395 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 453 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 454 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 513 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 514 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 570 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 571 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 630 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 631 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 690 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 691 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 747 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 748 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 798 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 3406 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 3465 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 3466 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 3523 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 3524 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 3582 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 3583 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 3642 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 3643 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 3699 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 3700 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 3759 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 3760 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 3819 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 3820 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 3876 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 3877 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 3927 >seq1191 Length=39656 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 28352 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 28411 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 28412 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 28469 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 28470 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 28528 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 28529 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 28588 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 28589 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 28645 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 28646 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 28705 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 28706 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 28765 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 28766 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 28822 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 28823 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 28873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413547037560