Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2433 109 6e-19 seq1191 109 6e-19 >seq2433 Length=14949 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 843 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 784 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 783 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 727 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 726 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 667 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 666 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 607 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 606 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 568 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 3972 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 3913 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 3912 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 3856 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 3855 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 3796 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 3795 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 3736 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 3735 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 3697 >seq1191 Length=39656 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 28918 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 28859 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 28858 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 28802 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 28801 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 28742 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 28741 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 28682 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 28681 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 28643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583240378581240