Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq463 282 5e-71 seq2292 120 3e-22 >seq463 Length=3795 Score = 282 bits (312), Expect = 5e-71 Identities = 548/788 (70%), Gaps = 26/788 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| | |||||| ||||||| ||| | || ||||| | |||||| | | || Sbjct 603 CCGCAGCAGCTTTTCCTGCGCGTTGCCCTCGGCATCCATGTCGACGACCTGAAAAGCGTA 662 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTT 53298 || ||||| |||||||| ||| | || | | ||| ||||||||||| || ||||| || Sbjct 663 CGCGAGACCTACGACTTGATGT-CGAAGGGCTTCTTCACGCACGCCACCCCGACCCTCTT 721 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 |||||| || ||| | || |||||| |||| ||||| |||| || |||||| Sbjct 722 CAACGCCGGCACGCCGAAGCCGCAGATG---AGCTCGTGCTTCTTGGTCGCCTCGAAGGA 778 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||| ||||||||||| ||||| ||||| |||||||| || |||| |||| | | Sbjct 779 CGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCGGC 838 Query 53416 GGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 || || || || | ||| ||| | ||| |||| | ||||| ||| || | Sbjct 839 CGGCGGCATTGGCCTGCACGTGCAC-AACATCCGCTCCGCCGGCAGCTACATCGCCGGCA 897 Query 53475 CGAACGGCGTCGCCGA-TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 |||||||| || ||| ||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 898 CGAACGGCA-CGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCCCGC 956 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| || || ||||||||||| | |||||| | ||||| ||||||||| Sbjct 957 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGG 1016 Query 53594 CACGCCGACATTATGGAGTTTCTCG-AGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 ||||||||||| | | | |||| | |||| | || || | || || ||| Sbjct 1017 CACGCCGACATCTTCG-GCTTCTTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCG 1075 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 | ||||||||| ||| || ||||||| || ||||| |||||| ||| | ||| Sbjct 1076 CGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCATG---AAGCGTGTGAA 1132 Query 53713 GGACGAGG---AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CT 53768 | ||||| ||||| |||||| |||| | ||||| || || || | | || Sbjct 1133 GAGCGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCT-GAGCGACTGCT 1191 Query 53769 ACGGTGAGGAGTTT-AACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAA 53826 |||| ||||||||| |||| |||| || || |||| | |||||| | | | Sbjct 1192 ACGGCGAGGAGTTTGAACG-CCTGTA-CGAGCGCTACGAGAAGGAAGGCCGCGGCGTGCA 1249 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || | || |||||| ||||| ||| || ||||| || ||| | |||||||| Sbjct 1250 GACGATCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCACAGATCGAGACGGGCGT 1309 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGT 53946 ||| | ||| |||||||||| || |||| ||| |||||||||||| | ||| Sbjct 1310 GCCTTTCATCCTCTACAAGGATGCGTGCAACAGCAAGTCGAACCAGAAGAACCTTGGCAC 1369 Query 53947 CATCAAAT 53954 ||||||| Sbjct 1370 GATCAAAT 1377 Score = 150 bits (166), Expect = 2e-31 Identities = 311/453 (69%), Gaps = 11/453 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | ||||||||||| | ||||||| ||||| |||||||||||| | |||||| | Sbjct 1887 GGCATGCGCAACTCCCTCTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTC 1946 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||| |||||| |||||||| | ||| | ||||||||| | ||||| | | Sbjct 1947 GGCAATAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGT 2006 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGAT-CAACAAGTG 55656 || ||||| || | |||||| ||||||| | |||||| || || | | ||| Sbjct 2007 GGCGAGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCT-CATCCGACGCGGCCTGTG 2065 Query 55657 GAACCCGCAGAT-CAAGACG-GATATTGTGCGG-AACGGGGGGTCCGTCCAGAATCTGGA 55713 |||| | ||| | ||| ||| | | ||||| ||| ||| || | || Sbjct 2066 GAACGAGACGATGCGCAACGAGATCATCTCATTCAACGGC---TCCATCCTGACAATTGA 2122 Query 55714 --GATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 | ||| | || | |||||||| | ||||| || |||||||||||||||||| | Sbjct 2123 CGGCATCCCCGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGCAA 2182 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 ||||| |||||| || || || ||||||||||||||| ||||| ||||| | Sbjct 2183 GCTGATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCGCAGTCGTTGAACCT 2242 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 ||| || ||| || | || | || | | ||||||| ||| ||| |||| || Sbjct 2243 GTTCCTGCAGAGCCCGACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTG 2302 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||||| ||||||| ||||| || Sbjct 2303 CGGCCTCAAGACGGGCGTGTACTACCTGCGCAC 2335 >seq2292 Length=71284 Score = 120 bits (132), Expect = 3e-22 Identities = 243/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 151882 CCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACTCCGGC 151941 || |||||| | ||||||||| ||| | |||||||||||| || |||| | |||| Sbjct 16897 CCAATGCCCACCGCACCGTTGCACAGCAGCATCGGCACAATGGGCACGTAGTGATTCGGC 16956 Query 151942 TCCACCTGT-TGAC--CGTCATCCATCACGTATTTCAA-AACGGAATTGTCAGCCGGATC 151997 |||||| | || | | |||||||| || | || ||||| | ||| || | Sbjct 16957 TCCACCGGCGTGCCTTCCTCATCCATA---TAGTCCAGCAACGGG-TCGTCCTCCTCAGG 17012 Query 151998 GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGG-AGCTGGCCGCAT 152056 || || | || || | |||| | ||| |||||||| |||| ||| ||| | Sbjct 17013 AAAGATGAGCCGGGTGAAGCGACTGAGCTTCGTAAAGATGTAGCGGGGAGC-GGCGTGGT 17071 Query 152057 CCTTGCC-ACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 | ||||| | |||| |||||| || ||||| || ||| |||| ||||||| |||| Sbjct 17072 CGTTGCCCAGCTGCT-GCCGCGAGCCGAACTGGCCCTCCGGCACGAGCAGGTTGATGTTG 17130 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||||| ||| ||||| |||| ||||||||||| ||||||| || || ||| Sbjct 17131 TTGCCGCCCGTGAAGTTCTGCGCCATCTTCACAATCGTCTCCTGCAGCGACGTCTCGCCG 17190 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 ||||| | |||| | ||| | |||||| || | | ||| |||||||| Sbjct 17191 TGGTGGAAGGCCGACACCTCGGAGATGTAGCCGGAGAGCTGGGCCACCTT 17240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196840599800