Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1046 129 5e-25 >seq1046 Length=41433 Score = 129 bits (142), Expect = 5e-25 Identities = 381/574 (66%), Gaps = 20/574 (3%) Strand=Plus/Plus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||||||||| ||||| || || |||| || | ||| |||||| || || || | | Sbjct 4543 GTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCGCCTT 4602 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || |||| ||| || || || || ||| |||||||| || || ||||| ||||| Sbjct 4603 CGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCAT 4662 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC-CGTC-----GCTCACGTAAAA 30069 ||| | || | |||||| ||| ||||| |||||| ||| | ||||||| || Sbjct 4663 GTCGCAGGAGCGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGAA 4722 Query 30070 CTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 ||| | | |||||| || || || ||||| || ||| | |||||||| || Sbjct 4723 CTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGGTTCAACGCGCACGGGTTCCACGC 4782 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGG-CGTTTTGCA 30188 | | || || || | ||| | |||||| ||||| ||||| || ||| | Sbjct 4783 GGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCCCTGAGCGTCTCCACAATCGACTTG-A 4841 Query 30189 GCTGATCCACCCCCATCCCCGA-GTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCCGAA 30246 ||||||||| || || ||| ||||| ||| | || | || ||||| | || ||||| Sbjct 4842 TCTGATCCACGCCT-TCTCCGTCGTAGTTTGCGTCGCA-GCCCCTGTACGCGGCGCCGAA 4899 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG---AA 30303 || | ||||||||| ||||| || || || ||||| | |||| ||| || || Sbjct 4900 GTGACGCCACTGGAAGCCGTAGACGGGGCCGAGGTC---CATTTCCTTGTTTTCCGTCAA 4956 Query 30304 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30363 || | |||| | || | | || ||||| ||||||| || | | |||| || Sbjct 4957 ACCGCGGCTGTCGAGGAACGCGCGTGAGGCGTTGCCGTCCCAAATATGAATGTCCTTGTC 5016 Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGG 30422 | ||| | | ||| || ||| | | |||||||||||||||||| ||| ||| Sbjct 5017 CGCCAGCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCACAGCAGCTCCTCACAC-ACGC 5075 Query 30423 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | ||| ||||| | ||| ||||| || ||||| Sbjct 5076 CACGCCAGAAGACACGCTTCGTCGTCAGCAGGGG 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406296529705692