Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1046 122 8e-23 >seq1046 Length=41433 Score = 122 bits (134), Expect = 8e-23 Identities = 370/568 (65%), Gaps = 8/568 (1%) Strand=Plus/Plus Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACAT 6620 ||||| || || || || | || ||||||||||| || || || ||| || | | Sbjct 4543 GTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCG-CCT 4601 Query 6621 GAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCA 6680 ||||||| ||| ||||| | || |||||||| |||||||| || | |||| Sbjct 4602 TCGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCA 4661 Query 6681 TGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC-CCCATTCGCG-----ACGTAGA 6734 |||| | || || || || ||| ||| |||||||| | || | | ||||||| Sbjct 4662 TGTCGCAGGAGCGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGA 4721 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACG 6794 | |||| || |||||| || || || |||||| | | | ||||||||||| Sbjct 4722 ACTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGGTTCAACGCGCACGGGTTCCACG 4781 Query 6795 CGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCA 6854 || | | |||| | ||| | |||||| | | | || || | | ||| | Sbjct 4782 CGGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCCCTGAGCGTCTCCACAATCGACTTGA 4841 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 ||| ||| | || | ||| |||| || |||| |||| ||| | || || |||| Sbjct 4842 TCTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGT 4901 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974 | | ||||||||| |||||||| ||||| | ||| |||| | || || | Sbjct 4902 GACGCCACTGGAAGCCGTAGACGGGGCCGAGGTCCATTTCCTTGTTTTCCGTCAAACCGC 4961 Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034 | |||| || || | || || ||| ||||||| || | | || | || | Sbjct 4962 GGCTGTCGAGGAACGCGCGTGAGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCA 5021 Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094 || || | |||||| |||| | || |||||||||||||||||| |||||| || Sbjct 5022 GCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCACAGCAGCTCCTCACACACGCCACGCC 5081 Query 7095 AGTACACACGTTTCGTCGTCAGCAGCGG 7122 || | ||||| |||||||||||||| || Sbjct 5082 AGAAGACACGCTTCGTCGTCAGCAGGGG 5109 Score = 122 bits (134), Expect = 8e-23 Identities = 370/568 (65%), Gaps = 8/568 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || |||||||||||||| ||||| | |||| |||||| |||||||||||||||||| Sbjct 5109 CCCCTGCTGACGACGAAGCGTGTCTTCTGGCGTGGCGTGTGTGAGGAGCTGCTGTGGTTC 5050 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | |||| |||||| | || ||| || | || | | || ||||||| Sbjct 5049 TTGCGTGGGGAGACGAACGCGCAGCTGCTGGCGGACAAGGACATTCATATTTGGGACGGC 4990 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 ||| || || | || || |||| || || || | |||| ||| | Sbjct 4989 AACGCCTCACGCGCGTTCCTCGACAGCCGCGGTTTGACGGAAAACAAGGAAATGGACCTC 4930 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| |||||||| ||||||||| | ||||| || || | ||| |||| |||| || Sbjct 4929 GGCCCCGTCTACGGCTTCCAGTGGCGTCACTTCGGCGCCGCGTACAGGGGCTGCGACGCA 4870 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 |||| ||| | || | ||| ||| | ||| | | || || | | | |||| Sbjct 4869 AACTACGACGGAGAAGGCGTGGATCAGATCAAGTCGATTGTGGAGACGCTCAGGGCGAAC 4810 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | ||| | |||| | | ||||||||||||| | | | |||||| Sbjct 4809 CCAAACGACCGCCGGATGCTCTTCACCGCGTGGAACCCGTGCGCGTTGAACCAGATGGCC 4750 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-----CGCGAATGGG-GAGCTGTCC 34636 || || || |||||| || |||| |||||||| | | || | |||||||| Sbjct 4749 CTGCCGCCCTGCCACCTACTTGGCCAGTTCTACGTGAACACACAAACGAAAGAGCTGTCG 4690 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||| ||| || || || || | |||||||| | || |||||||| |||||||| Sbjct 4689 TGCATGCTGTACCAGCGCTCCTGCGACATGGGCCTCGGCGTGCCGTTTAACATTGCCTCG 4630 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGT 34755 || | ||||| ||| ||||||| | | || ||| || || || |||||||| Sbjct 4629 TATTCGCTGCTGACGATTTTGATCGCGAAGG-CGACAGGTCTGCGACCGGGTGAGCTGGT 4571 Query 34756 GCATACGTTGGGGGATGCGCATATCTAC 34783 ||| || | || || || || ||||| Sbjct 4570 GCACACACTCGGTGACGCACACGTCTAC 4543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246705212720