Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2647 159 8e-34 seq2270 159 8e-34 seq2203 159 8e-34 seq2641 154 3e-32 >seq2647 Length=59499 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || |||||||| || ||||| || || | || || Sbjct 6422 AGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 6363 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 6362 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 6303 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || ||||| || | |||| Sbjct 6302 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC---GCTCGCCTCCACCTCCAGCGCGATC 6246 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 6245 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 6211 >seq2270 Length=72018 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || |||||||| || ||||| || || | || || Sbjct 71750 AGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 71809 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 71810 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 71869 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || ||||| || | |||| Sbjct 71870 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC---GCTCGCCTCCACCTCCAGCGCGATC 71926 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 71927 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 71961 >seq2203 Length=74467 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || |||||||| || ||||| || || | || || Sbjct 74 AGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 133 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 134 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 193 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || ||||| || | |||| Sbjct 194 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC---GCTCGCCTCCACCTCCAGCGCGATC 250 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 251 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 285 >seq2641 Length=10753 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || ||||| || || | || || Sbjct 8070 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 8129 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 8130 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 8189 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || ||||| || | |||| Sbjct 8190 TGGATCTTCGCCTTCACGTTCTCGATCGTGTC---GCTCGCCTCCACCTCCAGCGCGATC 8246 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 8247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159110400570365