Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1046 122 6e-23 >seq1046 Length=41433 Score = 122 bits (134), Expect = 6e-23 Identities = 399/608 (66%), Gaps = 24/608 (4%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| |||||||| ||||| || ||||||||| ||||| || || ||||| Sbjct 4511 AGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGC 4570 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 || | ||| |||||| || || || | | || |||| ||| || || || || Sbjct 4571 ACCAGCTCACCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATAC 4630 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||| |||||||| || || ||||| |||||||| | || | |||||| ||| ||| Sbjct 4631 GAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAGGAGCGCTGGTACAGCATGCAC 4690 Query 27310 GAGAGCTCTCCATCGCTT--------ACGTAAAACTGACATATGGCGTGGCACGGAGGAA 27361 || |||||| ||| || ||||| ||||| | | |||||| || || | Sbjct 4691 GACAGCTCTT--TCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCA 4748 Query 27362 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 27421 | ||||| || ||| | |||||||| ||| | || || || | ||| | || Sbjct 4749 GGGCCATCTGGTTCAACGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTG 4808 Query 27422 GGTTGTTCCTGATGAGGTCCACGG-CGTTTTGCAGCTGATCCACCCCCATCCCCGA-GTA 27479 |||| ||||| ||||| || ||| | ||||||||| || || ||| ||| Sbjct 4809 GGTTCGCCCTGAGCGTCTCCACAATCGACTTG-ATCTGATCCACGCCT-TCTCCGTCGTA 4866 Query 27480 GTCTACC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCG 27538 || | | | || | || ||||| | || ||||| || | ||| ||||| ||||| || | Sbjct 4867 GTTTGCGTCGCA-GCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGG 4925 Query 27539 GTCCCAGGTCTCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGG 27595 | || ||||| | |||| ||| || || || | |||| | || | | | Sbjct 4926 GGCCGAGGTC---CATTTCCTTGTTTTCCGTCAAACCGCGGCTGTCGAGGAACGCGCGTG 4982 Query 27596 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 27655 | ||||| ||||||| || | | |||| || | ||| | | ||| || || Sbjct 4983 AGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCC 5042 Query 27656 CTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 27714 | | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||||| Sbjct 5043 CACGCAAGAACCACAGCAGCTCCTCACAC-ACGCCACGCCAGAAGACACGCTTCGTCGTC 5101 Query 27715 AGGAGGGG 27722 || ||||| Sbjct 5102 AGCAGGGG 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369494586063431