Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2270 98.7 2e-15 seq2203 98.7 2e-15 seq2647 95.1 3e-14 seq2641 95.1 3e-14 >seq2270 Length=72018 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || || | || | || || Sbjct 71750 AGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 71809 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||||| || ||| || ||||| || Sbjct 71810 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 71869 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | |||| ||| || || || | || || Sbjct 71870 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTC 71929 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 71930 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 71961 >seq2203 Length=74467 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || || | || | || || Sbjct 74 AGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 133 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||||| || ||| || ||||| || Sbjct 134 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 193 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | |||| ||| || || || | || || Sbjct 194 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTC 253 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 254 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 285 >seq2647 Length=59499 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || || | || | || || Sbjct 6422 AGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 6363 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||||| || ||| || ||||| || Sbjct 6362 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 6303 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | |||| ||| || || || | || || Sbjct 6302 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTC 6243 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 6242 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 6211 >seq2641 Length=10753 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || || | || | || || Sbjct 8070 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 8129 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||||| || ||| || ||||| || Sbjct 8130 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 8189 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | |||| ||| || || || | || || Sbjct 8190 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTC 8249 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 8250 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153779391895471