Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2641 170 4e-37 seq2203 167 5e-36 seq2647 161 2e-34 seq2270 161 2e-34 seq2433 96.9 7e-15 seq1191 96.9 7e-15 seq2292 89.7 1e-12 seq2096 87.8 4e-12 >seq2641 Length=10753 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 8055 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 8114 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 8115 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 8174 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 8175 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 8234 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 8235 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8281 >seq2203 Length=74467 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 59 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 118 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 119 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 178 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 179 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 238 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 239 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 285 >seq2647 Length=59499 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 6437 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 6378 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 6377 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 6318 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 6317 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 6258 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 6257 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 6211 >seq2270 Length=72018 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || || || | || || || |||||||||||||| || Sbjct 71735 CCGCCGCGCAGGCGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCG 71794 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 71795 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 71854 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 71855 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 71914 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 71915 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 71961 >seq2433 Length=14949 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 480 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 421 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 420 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 361 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 360 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 301 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 300 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 268 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 3609 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 3550 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 3549 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 3490 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 3489 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 3430 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 3429 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 3397 >seq1191 Length=39656 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 28555 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 28496 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 28495 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 28436 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 28435 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 28376 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 28375 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 28343 >seq2292 Length=71284 Score = 89.7 bits (98), Expect = 1e-12 Identities = 188/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || ||||| || ||||| | || | || ||||| ||||| ||| ||| ||| || Sbjct 17038 AGCTTCGTAAAGATGTAGCGGGGAGCGGCGTGGTCGTTGCCCAGCTGCTGCCGCGAGCCG 17097 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||| ||| ||| |||||||||| || | | | ||| ||||| Sbjct 17098 AACTGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCCGTGAAGTTCTGCGCCATC 17157 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||| || ||| |||| || || |||||||||||| |||| |||| ||| Sbjct 17158 TTCACAATCGTCTCCTGCAGCGACGTCTCGCCGTGGTGGAAGGCCGACACCTCGGAGATG 17217 Query 273954 TAACCACTGAACTGAGCAACCTT---CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAA 274010 || || || ||| || ||||| | | ||||| | ||| ||||| | | Sbjct 17218 TAGCCGGAGAGCTGGGCCACCTTGGCCGCCTCGCTACT---GTTACGCTTCAGCATCGCC 17274 Query 274011 TACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 ||| | ||| |||||||| ||||| | ||| || ||| Sbjct 17275 CACAGGATCTTGCGCTGCGACGGCTTTAGCCCGTCCACG 17313 >seq2096 Length=27730 Score = 87.8 bits (96), Expect = 4e-12 Identities = 226/339 (67%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 ||||| ||||||| | | | || | ||||||||||| || ||||| | | || ||||| Sbjct 8807 GTGAAGATGTACC-GTCCCGCGGCGTGGTCCTTGCCGCCCTGCAGACGTGTGCCGAACTG 8749 Query 273839 ACCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || || | ||| || || | |||||||| |||||| | ||||| ||||| Sbjct 8748 GCCGTCTTTGCGCAACAG--AGGA-ACGTTGTTGCCGCCGACGAAGTCCTGCGCCATGCC 8692 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 |||||| ||| | || || ||||||||||| |||||| |||||| |||| || Sbjct 8691 CACGATCGTCTGCACGAGCGACTGGTCGCCGTGGTGGTAGGCGGAGTGTTCCGCGACGTA 8632 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAA 274015 || | ||| | ||||| | || | | ||| |||||||| || | | | Sbjct 8631 GCCGGCTAGCTGCACCACCTTGATGGCGTTGACGAGGTTGCGCTTGAAGCAGGCAAAGAG 8572 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATC 274075 | ||| ||||| |||||||| || |||| | || || ||||| || |||| Sbjct 8571 GATCTTGCGCTGGCCGGGCTTGAGGCCGTCAATTGCGCTGGGGATGCTGCGCTCGCAATC 8512 Query 274076 ATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 |||||| | |||||| |||||||| | |||||| Sbjct 8511 CGCAATAGAGAAAAGAATCAGCTCCTTGTCCACGAAGTC 8473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046701634819854