Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2641 158 9e-34 seq2203 156 3e-33 seq2270 147 2e-30 seq2647 145 5e-30 >seq2641 Length=10753 Score = 158 bits (174), Expect = 9e-34 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 8052 ATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 8111 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| ||| | || ||||||||||| ||||| ||||||| |||||||| || | Sbjct 8112 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGC 8171 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| |||| | |||| | || |||||| | || Sbjct 8172 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCTC 8230 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||| || |||||||| || || || |||||||||||||| |||||||| Sbjct 8231 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 8284 >seq2203 Length=74467 Score = 156 bits (172), Expect = 3e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || Sbjct 55 CATGCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 114 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| ||| | || ||||||||||| ||||| ||||||| |||||||| || | Sbjct 115 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 174 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 175 CGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 233 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||||||| || |||||||| || || || |||||||||||||| |||||||| Sbjct 234 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 288 >seq2270 Length=72018 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| || || |||||| ||||||||||| || Sbjct 71731 CATGCCGCCGCGCAGGCGCAGCACAAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTC 71790 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| ||| | || ||||||||||| ||||| ||||||| |||||||| || | Sbjct 71791 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 71850 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 71851 CGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 71909 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || |||||||| || || || |||||||||||||| |||||| Sbjct 71910 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 71962 >seq2647 Length=59499 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || ||| Sbjct 6437 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 6378 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||||| |||||||| || | || Sbjct 6377 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 6318 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| ||||| |||| | || |||||| | ||||| Sbjct 6317 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTCGCCTCCAC 6259 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||| || || || |||||||||||||| |||||| Sbjct 6258 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 6210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359978110940217