Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5662 185 1e-41 >seq5662 Length=28022 Score = 185 bits (204), Expect = 1e-41 Identities = 409/607 (67%), Gaps = 20/607 (3%) Strand=Plus/Plus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| |||||| | |||||| || || ||||||||| ||||| || || ||| Sbjct 3282 CAGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTG 3341 Query 145731 GATGAAGTCCCCGGGCTCG-AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGT 145789 | | || || || ||| || || || | |||| || |||||||| || | Sbjct 3342 CACCAGCTCACCCGG-TCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAAT 3400 Query 145790 AGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGC 145849 | ||| ||||| || ||||| || || |||||||| | || |||||||||||| || Sbjct 3401 ACGAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAGGAACGCTGGTACAGCATGC 3460 Query 145850 AGGAGAGCTCCC-CGCCCGC-----CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCA 145903 | || ||||| || | |||||||||||||| || |||||||||||||||| Sbjct 3461 ACGACAGCTCTTTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCA 3520 Query 145904 GGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG- 145962 ||||||| | || | ||||||||| ||||||| || || ||| || ||| Sbjct 3521 GGGCCATCTGGTTCAACGCGCACGGGTTCCACGCGGTGAAGA---GCATCCGGCGGTCGT 3577 Query 145963 --GGGTTCCTCTTGA---TCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCC 146017 |||||| | ||| ||||| | ||| | ||| ||| |||||||| | || Sbjct 3578 TTGGGTTCGCCCTGAGCGTCTCCACAATCGACT---TGATCTGATCCACGCCTTCTCCGT 3634 Query 146018 GGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGA 146077 ||| | || | | || || ||||||||| |||||||| | ||||||||| ||||||| Sbjct 3635 CGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGA 3694 Query 146078 CGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGG 146137 |||| || |||||| || | | | || ||| | | ||||||| | || | Sbjct 3695 CGGGGCCGAGGTCCATTTCCTTGTTTTCCGTCAAACCGCGGCTGTCGAGGAACGCGCGTG 3754 Query 146138 ACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACC 146197 | ||||| ||||||| || | | | || | | | ||| | | || ||| || Sbjct 3755 AGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCC 3814 Query 146198 CCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCA 146257 | | | |||||| |||||||| || || || | ||||||||| | ||| || |||| Sbjct 3815 CACGCAAGAACCACAGCAGCTCCTCACACACGCCACGCCAGAAGACACGCTTCGTCGTCA 3874 Query 146258 GCAGGGG 146264 ||||||| Sbjct 3875 GCAGGGG 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590033104812960