Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5211 87.8 2e-12 seq3191 82.4 6e-11 >seq5211 Length=10013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/133 (77%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGC-AACCACATCATCATGCTGGAGCCGCACT 38786 ||||||| | || | |||||| | |||||| |||||| ||||||| || | ||| Sbjct 2448 CGGCGGCCTCGGCATCAACCTG-CAGGCGGCTAACCACGTCATCATCTACGACTCCGACT 2390 Query 38787 GGAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGC 38846 |||||||||| || || ||||||||||| |||||| ||||||||| || | |||||| Sbjct 2389 GGAACCCGCAGATGGACCTGCAGGCGCAGGACCGCGCCCACCGCATCGG---GCAAAAGC 2333 Query 38847 GCA-CGTACGTGT 38858 ||| ||| || || Sbjct 2332 GCAGCGTTCGCGT 2320 >seq3191 Length=32291 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 38715 TGTCCATCAAGTGCGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGC 38774 |||||| | | ||||||||||||||||||||||||||||| | || |||| | Sbjct 28273 TGTCCACCCGCTCCGGCGGCGTGGGGCTGAACCTGACCGGCGCCGACACGGTCATTTTCT 28332 Query 38775 TGGAGCCGC-ACTGGAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATG 38833 || | || | ||||||||| || || ||||||||||| |||||| ||||||||| Sbjct 28333 ACGA-CAGCGATTGGAACCCGACGATGGATCTGCAGGCGCAGGACCGCTGCCACCGCATC 28391 Query 38834 GGCCAGA 38840 || |||| Sbjct 28392 GGGCAGA 28398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422228713413584