Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3869 432 4e-116 seq3130 426 2e-114 seq3131 417 8e-112 seq5372 89.7 5e-13 seq4556 89.7 5e-13 seq4382 89.7 5e-13 seq2456 89.7 5e-13 seq2455 89.7 5e-13 >seq3869 Length=3640 Score = 432 bits (478), Expect = 4e-116 Identities = 624/864 (72%), Gaps = 20/864 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| |||||| | ||||| || |||| ||| Sbjct 2679 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGAC 2738 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | |||||| Sbjct 2739 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTG 2798 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| || ||||||| | |||||||| ||||| || |||||||||||| Sbjct 2799 GGCAACGACATGAAGGACTGGGTGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGCAC 2858 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||| ||||| ||||| | ||||||||||||||| | |||||| || | |||| ||| Sbjct 2859 GTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTC 2918 Query 116816 GCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || ||| ||||| | |||||||| || ||||| || ||| | ||||| Sbjct 2919 -ATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGA 2977 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGG 116933 |||| | ||||| || | ||| ||| || | ||||||||| | || | | |||| Sbjct 2978 GAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAGG 3036 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| || || || |||| ||| ||||||| |||||| || | ||||||| |||| Sbjct 3037 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGT 3096 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||||| |||| ||||| |||||| | || |||| ||||| ||| | | ||||| Sbjct 3097 GGGCGGTGCGGTGGAT---CGGCAGCGGAGCGAGCTTCCAGGAGCGGCTGATCGGCTTCG 3153 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 |||| || |||||| ||||||| ||||| ||| ||| | || ||||| ||||| | Sbjct 3154 CGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGC 3213 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 |||| || ||||| || ||||| |||||||||||||| ||||| | |||||||| |||| Sbjct 3214 GCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGC 3273 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCG 117229 | |||||||| || |||||| ||| ||| | ||| | | | |||| | | Sbjct 3274 ACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCA-CAAGCTGCCGCGCGAG 3332 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGC 117288 ||||| ||||||| || |||||||| |||||||| ||| ||| || ||| || Sbjct 3333 CGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGC 3391 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 |||||||||||| ||| | || | || ||| | | |||| |||| ||||||||||||| Sbjct 3392 GCTGCCGGTGCGACTGATCGGCATGAA-CGCGGACCTGATGGCGCAGTACATCGAGTTCG 3450 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGC--GCCAAGCACTACAACACGCCCAACCC 117405 | || ||| ||||||| | ||||| ||| | |||||||||||| | | | || Sbjct 3451 TGGCGGACCGGCTGCTTGTATCGCTGG--GGCTGGAGAAGCACTACAACGTGACGCAGCC 3508 Query 117406 GCTGGACTTTATGAACCTCATCTC 117429 | | ||||| ||| | | ||||| Sbjct 3509 GTTCGACTTCATGGAGATGATCTC 3532 >seq3130 Length=3696 Score = 426 bits (472), Expect = 2e-114 Identities = 623/864 (72%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| | || |||||||| ||| |||||| | ||||| || |||| ||| Sbjct 962 GAGCCGCTCCAGCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGAC 903 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | |||||| Sbjct 902 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTG 843 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| || ||||||| | |||||||| ||||| || |||||||||||| Sbjct 842 GGCAACGACATGAAGGACTGGGTGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGCAC 783 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||| ||||| ||||| | ||||||||||||||| | |||||| || | |||| ||| Sbjct 782 GTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTC 723 Query 116816 GCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || ||| ||||| | |||||||| || ||||| || ||| | ||||| Sbjct 722 -ATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGA 664 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGG 116933 |||| | ||||| || | ||| ||| || | ||||||||| | || | | |||| Sbjct 663 GAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAGG 605 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| || || || |||| ||| ||||||| |||||| || | ||||||| |||| Sbjct 604 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGT 545 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||||| |||| ||||| |||||| | || |||| ||||| ||| | | ||||| Sbjct 544 GGGCGGTGCGGTGGAT---CGGCAGCGGAGCGAGCTTCCAGGAGCGGCTGATCGGCTTCG 488 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 |||| || |||||| ||||||| ||||| ||| ||| | || ||||| ||||| | Sbjct 487 CGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGC 428 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 |||| || ||||| || ||||| |||||||||||||| ||||| | |||||||| |||| Sbjct 427 GCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGC 368 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCG 117229 | |||||||| || |||||| ||| ||| | ||| | | | |||| | | Sbjct 367 ACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCA-CAAGCTGCCGCGCGAG 309 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGC 117288 ||||| ||||||| || |||||||| |||||||| ||| ||| || ||| || Sbjct 308 CGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGC 250 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 |||||||||||| ||| | || | || ||| | | |||| |||| ||||||||||||| Sbjct 249 GCTGCCGGTGCGACTGATCGGCATGAA-CGCGGACCTGATGGCGCAGTACATCGAGTTCG 191 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGC--GCCAAGCACTACAACACGCCCAACCC 117405 | || ||| ||||||| | ||||| ||| | |||||||||||| | | | || Sbjct 190 TGGCGGACCGGCTGCTTGTATCGCTGG--GGCTGGAGAAGCACTACAACGTGACGCAGCC 133 Query 117406 GCTGGACTTTATGAACCTCATCTC 117429 | | ||||| ||| | | ||||| Sbjct 132 GTTCGACTTCATGGAGATGATCTC 109 >seq3131 Length=4254 Score = 417 bits (462), Expect = 8e-112 Identities = 612/849 (72%), Gaps = 20/849 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| ||| |||||| | ||||| || |||| ||||| ||||||| |||| Sbjct 7 GAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTAC 66 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || ||| | ||||||| | |||||| | |||||| ||| |||| || Sbjct 67 AAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAG 126 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||| | |||||||| ||||| || ||||||||||||||||| ||||| ||| Sbjct 127 GACTGGGTGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTC 186 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-GAGGTGCA 116829 || | ||||||||||||||| | |||||| || | |||| ||| | || || ||| | Sbjct 187 GCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTC-ATGAGCGACGTGAA 245 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| | |||||||| || ||||| || ||| | ||||||||| | ||||| || Sbjct 246 GGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGA 305 Query 116890 AATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 | ||| ||| || | ||||||||| | || | | ||||||||||| || || Sbjct 306 GACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGC-GAGGAGAAGCTGCGGCTGC 364 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 || |||| ||| ||||||| |||||| || | ||||||| ||||||||| |||| |||| Sbjct 365 TGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGA 424 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 | |||||| | || |||| ||||| ||| | | ||||||||| || |||||| Sbjct 425 T---CGGCAGCGGAGCGAGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCA 481 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 ||||||| ||||| ||| ||| | || ||||| ||||| ||||| || ||||| | Sbjct 482 TCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTG 541 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 | ||||| |||||||||||||| ||||| | |||||||| ||||| |||||||| | Sbjct 542 GGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGT 601 Query 117189 GTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATC 117244 | |||||| ||| ||| | ||| | | | |||| | |||||| ||||||| Sbjct 602 GCCTGCTGTACAACACGCACATCAAGCA-CAAGCTGCCGCGCGAGCGCGTGCTGGAGATC 660 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303 || |||||||| |||||||| ||| ||| || ||| |||||||||||||| || Sbjct 661 ATCGTAGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGCGCTGCCGGTGCGACT 719 Query 117304 GCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGC 117362 | | || | || ||| | | |||| |||| |||||||||||||| || ||| |||||| Sbjct 720 GATCGGCATGAA-CGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGC 778 Query 117363 TGCTCGAGCTGGTCGGC--GCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAA 117420 | | ||||| ||| | |||||||||||| | | | ||| | ||||| ||| | Sbjct 779 TTGTATCGCTGG--GGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGA 836 Query 117421 CCTCATCTC 117429 | ||||| Sbjct 837 GATGATCTC 845 >seq5372 Length=30894 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGC--GTCGAGAACGGAGTGCCCTACTGGG 73638 || ||||||| ||||||||||| || ||| | |||| | | | ||||| ||||||| Sbjct 30728 CTGAACCACGGTGTGCTGCTGGTGGGGTACAACACGTCGGGCA--GTGTGCCGTACTGGG 30785 Query 73639 TGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 || |||||||| |||||||| |||||||||||| |||||| | |||| || || Sbjct 30786 TGATCAAGAACTCGTGGGGCACGGACTGGGGCGAGGACGGCTTTGTCCGTGTGCG 30840 >seq4556 Length=1841 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGC--GTCGAGAACGGAGTGCCCTACTGGG 73638 || ||||||| ||||||||||| || ||| | |||| | | | ||||| ||||||| Sbjct 1675 CTGAACCACGGTGTGCTGCTGGTGGGGTACAACACGTCGGGCA--GTGTGCCGTACTGGG 1732 Query 73639 TGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 || |||||||| |||||||| |||||||||||| |||||| | |||| || || Sbjct 1733 TGATCAAGAACTCGTGGGGCACGGACTGGGGCGAGGACGGCTTTGTCCGTGTGCG 1787 >seq4382 Length=1970 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGC--GTCGAGAACGGAGTGCCCTACTGGG 73638 || ||||||| ||||||||||| || ||| | |||| | | | ||||| ||||||| Sbjct 1004 CTGAACCACGGTGTGCTGCTGGTGGGGTACAACACGTCGGGCA--GTGTGCCGTACTGGG 947 Query 73639 TGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 || |||||||| |||||||| |||||||||||| |||||| | |||| || || Sbjct 946 TGATCAAGAACTCGTGGGGCACGGACTGGGGCGAGGACGGCTTTGTCCGTGTGCG 892 >seq2456 Length=1650 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGC--GTCGAGAACGGAGTGCCCTACTGGG 73638 || ||||||| ||||||||||| || ||| | |||| | | | ||||| ||||||| Sbjct 967 CTGAACCACGGTGTGCTGCTGGTGGGGTACAACACGTCGGGCA--GTGTGCCGTACTGGG 1024 Query 73639 TGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 || |||||||| |||||||| |||||||||||| |||||| | |||| || || Sbjct 1025 TGATCAAGAACTCGTGGGGCACGGACTGGGGCGAGGACGGCTTTGTCCGTGTGCG 1079 >seq2455 Length=3554 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGC--GTCGAGAACGGAGTGCCCTACTGGG 73638 || ||||||| ||||||||||| || ||| | |||| | | | ||||| ||||||| Sbjct 167 CTGAACCACGGTGTGCTGCTGGTGGGGTACAACACGTCGGGCA--GTGTGCCGTACTGGG 110 Query 73639 TGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 || |||||||| |||||||| |||||||||||| |||||| | |||| || || Sbjct 109 TGATCAAGAACTCGTGGGGCACGGACTGGGGCGAGGACGGCTTTGTCCGTGTGCG 55 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGC--GTCGAGAACGGAGTGCCCTACTGGG 73638 || ||||||| ||||||||||| || ||| | |||| | | | ||||| ||||||| Sbjct 2588 CTGAACCACGGTGTGCTGCTGGTGGGGTACAACACGTCGGGCA--GTGTGCCGTACTGGG 2531 Query 73639 TGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 || |||||||| |||||||| |||||||||||| |||||| | |||| || || Sbjct 2530 TGATCAAGAACTCGTGGGGCACGGACTGGGGCGAGGACGGCTTTGTCCGTGTGCG 2476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181048018240