Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3869 122 2e-22 seq3131 122 2e-22 seq3130 122 2e-22 >seq3869 Length=3640 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 3592 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 3534 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 3533 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 3476 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 3475 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 3417 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 3416 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 3359 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 3358 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 3299 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 3298 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 3242 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 3241 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 3185 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 3184 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 3129 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 3128 GCTCGCTCCGCTGCCGATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 3069 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 3068 CGTCTGGAT 3060 >seq3131 Length=4254 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 905 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 847 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 846 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 789 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 788 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 730 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 729 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 672 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 671 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 612 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 611 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 555 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 554 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 498 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 497 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 442 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 441 GCTCGCTCCGCTGCCGATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 382 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 381 CGTCTGGAT 373 >seq3130 Length=3696 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 49 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 107 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 108 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 165 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 166 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 224 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 225 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 282 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 283 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 342 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 343 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 399 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 400 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 456 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 457 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 512 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 513 GCTCGCTCCGCTGCCGATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 572 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 573 CGTCTGGAT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073684899788032