Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3869 147 3e-30 seq3131 147 3e-30 seq3130 147 3e-30 seq2006 127 3e-24 >seq3869 Length=3640 Score = 147 bits (162), Expect = 3e-30 Identities = 576/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 2715 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 2774 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 2775 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGC---TGAAC 2831 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | |||||||| || ||| ||| || ||| Sbjct 2832 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATC 2891 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 2892 GTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 2950 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||||| ||||| | ||||| |||||| | ||||| || | |||||| ||| | Sbjct 2951 GTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCT 3010 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 3011 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 3069 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | |||||||||| || | || | Sbjct 3070 TCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCGGAGCGAG-C 3128 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 ||| || | ||| | | ||||| || || |||||||||||||| ||||| | Sbjct 3129 TTCCAG----GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTC 3184 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| | Sbjct 3185 GTTCTGCGCTC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCA 3243 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| |||||||| || |||| || Sbjct 3244 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 3303 Query 125590 ACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | | || ||| | | |||| | || || ||| ||| || Sbjct 3304 CGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATCGTA---GAC 3356 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || |||| || || | ||||| | ||| | || ||||| | |||| |||||| Sbjct 3357 GCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATG 3416 Query 125709 AACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA-CGAG 125765 ||| | || ||| ||| ||||||| ||||| ||||| || || || | |||| || Sbjct 3417 AACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT 3475 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| ||| ||||||| | | | || || || |||||| | || || Sbjct 3476 GGGGCTGG--AGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCG 3533 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 3534 CTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 3577 >seq3131 Length=4254 Score = 147 bits (162), Expect = 3e-30 Identities = 576/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 28 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 87 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 88 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGC---TGAAC 144 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | |||||||| || ||| ||| || ||| Sbjct 145 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATC 204 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 205 GTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 263 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||||| ||||| | ||||| |||||| | ||||| || | |||||| ||| | Sbjct 264 GTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCT 323 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 324 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 382 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | |||||||||| || | || | Sbjct 383 TCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCGGAGCGAG-C 441 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 ||| || | ||| | | ||||| || || |||||||||||||| ||||| | Sbjct 442 TTCCAG----GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTC 497 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| | Sbjct 498 GTTCTGCGCTC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCA 556 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| |||||||| || |||| || Sbjct 557 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 616 Query 125590 ACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | | || ||| | | |||| | || || ||| ||| || Sbjct 617 CGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATCGTA---GAC 669 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || |||| || || | ||||| | ||| | || ||||| | |||| |||||| Sbjct 670 GCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATG 729 Query 125709 AACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA-CGAG 125765 ||| | || ||| ||| ||||||| ||||| ||||| || || || | |||| || Sbjct 730 AACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT 788 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| ||| ||||||| | | | || || || |||||| | || || Sbjct 789 GGGGCTGG--AGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCG 846 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 847 CTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 890 >seq3130 Length=3696 Score = 147 bits (162), Expect = 3e-30 Identities = 576/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 926 CTGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 867 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 866 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGC---TGAAC 810 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | | |||||||| || ||| ||| || ||| Sbjct 809 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATC 750 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| | || |||| | || || Sbjct 749 GTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 691 Query 125235 -TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||||| ||||| | ||||| |||||| | ||||| || | |||||| ||| | Sbjct 690 GTTTTACGGGTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCT 631 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 |||| |||||| | || | || | | || | ||| | |||| ||| | ||| Sbjct 630 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGA 572 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | |||||||||| || | || | Sbjct 571 TCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCGGAGCGAG-C 513 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 ||| || | ||| | | ||||| || || |||||||||||||| ||||| | Sbjct 512 TTCCAG----GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTC 457 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| | Sbjct 456 GTTCTGCGCTC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCA 398 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| |||||||| || |||| || Sbjct 397 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 338 Query 125590 ACTATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | | || ||| | | |||| | || || ||| ||| || Sbjct 337 CGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATCGTA---GAC 285 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || |||| || || | ||||| | ||| | || ||||| | |||| |||||| Sbjct 284 GCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATG 225 Query 125709 AACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA-CGAG 125765 ||| | || ||| ||| ||||||| ||||| ||||| || || || | |||| || Sbjct 224 AACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT 166 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| ||| ||||||| | | | || || || |||||| | || || Sbjct 165 GGGGCTGG--AGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCG 108 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 107 CTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 64 >seq2006 Length=20365 Score = 127 bits (140), Expect = 3e-24 Identities = 375/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | ||| || ||||| ||||| | | | ||| || || | || Sbjct 4226 ACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCC-CG 4168 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| ||| || ||||| | ||||| ||| | || || || Sbjct 4167 CTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTG 4108 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGC 96982 |||||| ||| | || | ||| | | || ||||| | | ||| || || Sbjct 4107 GCACGCCGACATCTTCGGCTTCTTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCA 4051 Query 96983 ACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA 97042 || ||| | ||| | ||||| || | ||| | ||||| ||||||||||||| || || Sbjct 4050 GCGCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCATGAAGCGTGTGAA 3991 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGA-CTCGTCACCCGGTCTGTCCGATTGCT 97101 || ||| | |||| || ||| | |||| | | | || || ||| ||| |||| Sbjct 3990 GAGCGAGGGCAAGTGGACGCTGATG-GATCCGAGCACATGCCCGGGGCTGAGCGACTGCT 3932 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGA 97160 ||||| |||||||| | |||| | ||||||| | |||||||| |||| ||| Sbjct 3931 ACGGCGAGGAGTTTGAACGCCTGTACGAGCGCTACGAGAAGGAGGGCCGCGGCGTGCAGA 3872 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 ||| || | || | || ||||| || ||| | | | ||| | ||||| || Sbjct 3871 CGA-TCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCGCAGATCGAGACGGGCGTG 3813 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| |||||||||||| | || |||| ||||| || | ||||| Sbjct 3812 CCTTTCATCCTCTACAAGGATGCATGCAACAGCAAGTCGAACCAGAAGAACCTTGGCACG 3753 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 ||||| |||| || |||||||| || ||||| |||||| |||| || || ||||| || Sbjct 3752 ATCAAATGCTCGAACCTGTGCACCGAGATTGTGGAGTACACCTCGCCCGAGGAGACTGCC 3693 Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCC 97369 || ||| || || ||| || ||||| Sbjct 3692 GTGTGCAACCTCGCCTCGATCGCGCTGCC 3664 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGA 98096 ||||| || || ||||||||||| || | | ||||||||| ||||| |||| | Sbjct 2974 TCTACCGCACCGTGTGGGAGATTCC-ACAGCGCAAGCTGATCGACATGGCCCGCGACCGC 2916 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCC-ACCTACAG 98155 || ||||| |||||| || ||||| || |||| | | || |||||| |||| | Sbjct 2915 GGCCAGTACATCGACCAGTCGCAGTCGTTGAACCTGTTCCT-GCAGAGCCCCACCTCGGG 2857 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || || ||||| | ||| ||| | ||| | ||||||||||||||| ||||||| Sbjct 2856 CCAGATCACGTCGATGCTCTTCTACACGTGGGAGTGCGGCCTCAAGACGGGCGTGTACTA 2797 Query 98216 TCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGACG 98262 ||| | || ||| |||| || | || || ||||| || |||| Sbjct 2796 CCTGCGCACGAAGGCGGCGGCCGACGCGATCAAGTTTACAGTAGACG 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741004324566240