Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2006 185 2e-41 >seq2006 Length=20365 Score = 185 bits (204), Expect = 2e-41 Identities = 520/778 (67%), Gaps = 28/778 (4%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | || || |||||| || Sbjct 4427 TTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCG 4368 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||||||||| |||||| || || | || || || ||| | Sbjct 4367 TGCTTCTTGGTCGCCTCGAAGGACGACAGCATCGACGGCATTTACGATACGCTGAAGGAG 4308 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCG-T 363723 || || | || |||| || ||||| ||||| || | || | ||||| | || | Sbjct 4307 TGCGCAGTCATCAGCAAGGCGGCCGGCGGCATTGGCCTGCA-CG-TGCACAACATCCGCT 4250 Query 363724 GCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | | | ||| ||||| |||||| || |||||||||||||| || ||||| Sbjct 4249 CCGCCGG-CAGCTACATCGCCGGCACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTA 4191 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| | ||||| |||||||| || || |||||||| || || Sbjct 4190 CGCGTCTTCAACAACACTGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCC 4131 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || |||| || ||||| || ||||| || || | | |||||| || | ||| Sbjct 4130 TTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATCTTCG-GCTTCTTG--CTGCTGAAG 4074 Query 363904 ---AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||||| || || || || ||| || ||||| || || || || | ||| | | Sbjct 4073 CGCAACACCGGCAAGGACGACCAGCGCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCA 4014 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTG---CCCA- 364014 |||| || |||||||| ||| || || | | || ||| || || || || | Sbjct 4013 GACCTGTTCATGAAGCGTGTGAAG--AGCGAGGGCAAGTGG--ACGCTGATGGATCCGAG 3958 Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 ||| ||| || || || ||| | || || || | || || ||||| Sbjct 3957 CAC--ATGCCCGGGGCTGAGCGACTGCTACGGCGAGGAGTTTGAACGCCTGTACGAGCGC 3900 Query 364075 TATGAATCGGAGGGAAAGGCTCGTA-AGACAATTCCCGCACAGAAGCTATGGTTTGCCAT 364133 || || |||||| | ||| |||| || | || ||| || | ||||| || || Sbjct 3899 TACGAGAAGGAGGGCCGCGG-CGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTCGCGAT 3841 Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193 | | || |||||||| ||||| || || | || | ||||| ||| | |||||| | Sbjct 3840 CCTTGAGTCGCAGATCGAGACGGGCGTGCCTTTCATCCTCTACAAGGATGCATGCAACAG 3781 Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTA 364252 |||||| |||||| || ||||||| || || || | | ||||| || ||||||||| Sbjct 3780 CAAGTCGAACCAGAAGAACCTTGGCACGAT-CAAATGCTCGAACCTGTGCACCGAGATTG 3722 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | || |||||| | ||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 3721 TGGAGTACACCTCGCCCGAGGAGACTGCCGTGTGCAACCTCGCCTCGATCGCGCTGCC 3664 Score = 107 bits (118), Expect = 5e-18 Identities = 283/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||||||| | ||||| |||||||| || || || | ||||||||||| || Sbjct 3230 CGCAACTCCCTCTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAAT 3171 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || |||||| || | || || Sbjct 3170 AACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGTGGCGAG 3111 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTGA 364910 || ||||| || || |||||||| || | ||| || ||||| ||||| |||||| || Sbjct 3110 TTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATCCGA-CGCGGCCTGTGGAACGA 3052 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 | ||| ||| | |||||| | || || || | | || ||| || | || Sbjct 3051 GACGATGCGCAACGAGATCATCTCATACAACGGCTCCATCCTGACAATTGACGGCATCCC 2992 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || || ||| | ||| ||||| ||||| ||| | ||| | || || || Sbjct 2991 CGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGCAAGCTGATCGA 2932 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| ||| ||||| | ||| ||| |||||||| ||| | ||| || | Sbjct 2931 CATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCGCAGTCGTTGAACCTGTTCCTG-C 2873 Query 365091 TCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 || || ||||| | | || | || || |||| |||||| |||| | | ||| || | Sbjct 2872 AGAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTGCGGCCTCA 2813 Query 365150 AGACAGG 365156 |||| || Sbjct 2812 AGACGGG 2806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303254673832568