Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2006 342 5e-89 seq3869 181 1e-40 seq3131 181 1e-40 seq3130 181 1e-40 >seq2006 Length=20365 Score = 342 bits (378), Expect = 5e-89 Identities = 1156/1772 (65%), Gaps = 49/1772 (3%) Strand=Plus/Plus Query 144736 GGCCGCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTA 144795 |||||| | ||| ||||||| ||||||| |||||| ||||| || | ||| ||||| Sbjct 2775 GGCCGCCGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTA 2834 Query 144796 GTCGTGTATCGACGTCATCAGAGCGTACGTGGG-CTCCGCCACAAACAAATTTAGCGATT 144854 | | | |||||||| ||| | | | ||||| ||| || | |||| || | ||| | Sbjct 2835 GAAGAGCATCGACGTGATCTGGCCCGAGGTGGGGCTCTGC-AGGAACAGGTTCAACGACT 2893 Query 144855 GGCTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTC- 144913 | || || ||| | | ||||||| |||||| || |||| | |||| | Sbjct 2894 GCGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCA---GCTTGCGCTGTG 2950 Query 144914 --ATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCT 144971 || ||||| |||| ||| | || | || ||| || ||||||||||| | | Sbjct 2951 GAATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCA 3010 Query 144972 GAATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATT-TCGGACGTGT-ACAGTTTTAA 145029 | || || || |||| | | || |||| ||||| || ||| |||| Sbjct 3011 GGATGGAGCCGTTGTATGAGATGATCTCGTTGCGCATCGTCT--CGTTCCACAGGCCGCG 3068 Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 ||| | ||| | | ||||| || || ||| | |||||||| ||| ||||| Sbjct 3069 TCGGATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACACG 3128 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || | || | ||| || |||||||| || || ||||||||||||| ||||| || | Sbjct 3129 GCGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGA 3188 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 |||| ||||||||||| ||||| ||| | || ||||||| |||| || | | | Sbjct 3189 CGTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCAC 3248 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG--CGAAGT-CGGCCTCACGTCC---CACAT 145263 | ||||| || | |||| ||||| | || || ||| | || | ||||| Sbjct 3249 CTTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTCTTCCACAT 3308 Query 145264 GTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCA 145323 |||| |||||| || |||| ||||||||| ||||| | |||| ||| |||| Sbjct 3309 GTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTC 3368 Query 145324 AGTTTTGGCGAGCTCGCAACT-CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTT 145382 || || | ||| || | |||||||| ||| |||| || || |||||| ||| | Sbjct 3369 CTCCTTCGCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCT 3427 Query 145383 GCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCAT 145442 ||| | | | ||| || | || || | |||| |||||||| | || |||| Sbjct 3428 CAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCAT 3487 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 | || || ||||| | |||| ||||| || || | ||||||||| | ||||| Sbjct 3488 CCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGCCG 3547 Query 145503 ACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTG 145562 ||| | || || || |||||||| | |||| ||| || | ||| | Sbjct 3548 TCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCG 3607 Query 145563 TAA---TGTGCCGCAACTTTTCAAAGTCAAAC-CGAGCCTCGTCAACGACCACACAGCTA 145618 | | ||| ||| || | | || | | || || || || || ||| ||| | Sbjct 3608 TGACGCTGTAGAGCAGCTGGTGA---TCCATCTCGCGCTTC-TCCTCGTTCACGAAGCGA 3663 Query 145619 TTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACG 145678 | |||||||| || | || || || || |||||||||| | |||| | || Sbjct 3664 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACA 3723 Query 145679 ATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTG 145738 ||||||| ||||| || |||||||| || || || || | ||| || || ||| Sbjct 3724 ATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTG 3783 Query 145739 TTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT- 145797 ||||| || ||||||||||| ||| | || |||| ||||| | ||||| ||| | ||| Sbjct 3784 TTGCATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATC 3843 Query 145798 -AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATT 145856 ||| || |||||||| | | | |||| | ||||||||| | ||||| Sbjct 3844 GCGAAC--CACACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCCTTCTCGTAGC 3901 Query 145857 TCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGG 145916 | ||| || |||||| | |||||||| ||| ||| || || || || | | Sbjct 3902 GCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCG 3961 Query 145917 GACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCC 145976 || |||||||| ||| ||| | | || || |||| ||| |||| ||||| | || Sbjct 3962 GATCCATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCC 4021 Query 145977 ACAGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCA- 146033 ||| |||||| | | || || |||| || || || || |||| ||||||| Sbjct 4022 ACAACGCGTAAAAGAGGTCACGGGCGCGCTG--GTCGTCCTTGCCGGTGTTGCGCTTCAG 4079 Query 146034 AATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | ||| | | | ||||||| ||||||||||| |||| || ||||||| ||| || | Sbjct 4080 CAGCAAGAAGCCGA-AGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCT 4138 Query 146094 TTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || || ||| ||||||||||||| || | ||||||| |||||||| | ||| | Sbjct 4139 TGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCG 4198 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGC 146210 || | | || | | ||||||||| | || | ||||| |||||| | | Sbjct 4199 GCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGT 4258 Query 146211 AATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCG 146270 || || | || ||| | |||||| | |||| || | ||||| || |||| Sbjct 4259 TGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCG 4318 Query 146271 TCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACAT 146328 | ||||| |||||||| ||||| ||| |||||| | ||| || |||||||||| ||| Sbjct 4319 TATCGTAAATGCCGTCGATGCTGTCGTCCTTCGA--GGCGACCAAGAAGCACGAGCTCAT 4376 Query 146329 CTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACA--TTTTT 146386 ||||| | ||||||| || || ||| | |||||| | |||||||| || | || Sbjct 4377 CTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTT 4436 Query 146387 CGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAA 146446 || ||||| || || ||| || || | ||||||| |||| ||||| | Sbjct 4437 CG--ACATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGG 4494 Query 146447 GCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 || ||||||| || | || || || ||||| Sbjct 4495 GCAACGCGCAGGAAGAGCTGCTGCGGACGCTC 4526 >seq3869 Length=3640 Score = 181 bits (200), Expect = 1e-40 Identities = 361/521 (69%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | ||||| | || |||||| || ||||||| |||| | ||| Sbjct 3069 ATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCGGA---GCG 3125 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-G 46202 | ||| ||||| || | | ||| ||| ||||||||| |||| || || || | Sbjct 3126 AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCG 3185 Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 || ||| || | || | | || || | |||| | ||||| || |||||||| |||| Sbjct 3186 TTCTGC-GCTCTGTTCTGGCTGAAGAAGCGCGGGC-TGATGCCTGGGCTGACGTTCAGCA 3243 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 |||||||||| |||||||||||||||||||| |||||||||||||| || || |||| Sbjct 3244 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 3303 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 | | | | | ||||||| ||| ||| ||||||| || || || |||||| Sbjct 3304 CGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGA 3363 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCATGAACGCA 46440 ||| ||| ||||| | | ||| ||| ||| ||| ||| | ||||||||||| Sbjct 3364 ACATCGAGCGCGAGTTCATCTGCGACGCGCTG-CCGGTGCGACTGATCGGCATGAACGCG 3422 Query 46441 CAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 | ||| ||| | ||||||||||| || |||||||| ||||| || ||| | Sbjct 3423 GACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCT 3481 Query 46500 GCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | |||||| | ||| | ||| | || || || || ||| | | ||||| ||| ||| Sbjct 3482 GGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGG 3540 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 |||| || || || ||||| ||| || ||||||||| || Sbjct 3541 GCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAG 3581 >seq3131 Length=4254 Score = 181 bits (200), Expect = 1e-40 Identities = 361/521 (69%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | ||||| | || |||||| || ||||||| |||| | ||| Sbjct 382 ATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCGGA---GCG 438 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-G 46202 | ||| ||||| || | | ||| ||| ||||||||| |||| || || || | Sbjct 439 AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCG 498 Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 || ||| || | || | | || || | |||| | ||||| || |||||||| |||| Sbjct 499 TTCTGC-GCTCTGTTCTGGCTGAAGAAGCGCGGGC-TGATGCCTGGGCTGACGTTCAGCA 556 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 |||||||||| |||||||||||||||||||| |||||||||||||| || || |||| Sbjct 557 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 616 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 | | | | | ||||||| ||| ||| ||||||| || || || |||||| Sbjct 617 CGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGA 676 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCATGAACGCA 46440 ||| ||| ||||| | | ||| ||| ||| ||| ||| | ||||||||||| Sbjct 677 ACATCGAGCGCGAGTTCATCTGCGACGCGCTG-CCGGTGCGACTGATCGGCATGAACGCG 735 Query 46441 CAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 | ||| ||| | ||||||||||| || |||||||| ||||| || ||| | Sbjct 736 GACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCT 794 Query 46500 GCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | |||||| | ||| | ||| | || || || || ||| | | ||||| ||| ||| Sbjct 795 GGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGG 853 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 |||| || || || ||||| ||| || ||||||||| || Sbjct 854 GCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAG 894 >seq3130 Length=3696 Score = 181 bits (200), Expect = 1e-40 Identities = 361/521 (69%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | ||||| | || |||||| || ||||||| |||| | ||| Sbjct 572 ATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCGGA---GCG 516 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-G 46202 | ||| ||||| || | | ||| ||| ||||||||| |||| || || || | Sbjct 515 AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCG 456 Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 || ||| || | || | | || || | |||| | ||||| || |||||||| |||| Sbjct 455 TTCTGC-GCTCTGTTCTGGCTGAAGAAGCGCGGGC-TGATGCCTGGGCTGACGTTCAGCA 398 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 |||||||||| |||||||||||||||||||| |||||||||||||| || || |||| Sbjct 397 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACA 338 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 | | | | | ||||||| ||| ||| ||||||| || || || |||||| Sbjct 337 CGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGA 278 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC-CTGCTGGGCATGAACGCA 46440 ||| ||| ||||| | | ||| ||||| | ||| ||| | ||||||||||| Sbjct 277 ACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGG-TGCGACTGATCGGCATGAACGCG 219 Query 46441 CAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 | ||| ||| | ||||||||||| || |||||||| ||||| || ||| | Sbjct 218 GACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCT 160 Query 46500 GCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | |||||| | ||| | ||| | || || || || ||| | | ||||| ||| ||| Sbjct 159 GGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGG 101 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 |||| || || || ||||| ||| || ||||||||| || Sbjct 100 GCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471977847452160