Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3869 145 2e-29 seq3131 145 2e-29 seq3130 145 2e-29 seq5741 107 4e-18 >seq3869 Length=3640 Score = 145 bits (160), Expect = 2e-29 Identities = 497/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 3559 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 3500 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 3499 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 3440 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 3439 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 3380 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 3379 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 3320 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 3319 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 3261 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 3260 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 3203 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 3202 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 3143 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | || | ||||| |||||||||| Sbjct 3142 AGCCGCTCCTGGAAGCTCGCTCCGCTGC-CGATCCACCGCACCGCCCACTCTGCCTTCTT 3084 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 3083 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 3028 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 3027 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 2968 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 2967 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 2908 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 2907 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 2848 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 2847 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 2814 >seq3131 Length=4254 Score = 145 bits (160), Expect = 2e-29 Identities = 497/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 872 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 813 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 812 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 753 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 752 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 693 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 692 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 633 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 632 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 574 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 573 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 516 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 515 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 456 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | || | ||||| |||||||||| Sbjct 455 AGCCGCTCCTGGAAGCTCGCTCCGCTGC-CGATCCACCGCACCGCCCACTCTGCCTTCTT 397 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 396 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 341 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 340 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 281 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 280 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 221 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 220 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 161 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 160 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 127 >seq3130 Length=3696 Score = 145 bits (160), Expect = 2e-29 Identities = 497/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 82 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 141 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 142 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 201 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 202 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 261 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 262 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 321 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 322 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 380 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 381 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 438 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 439 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 498 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | || | ||||| |||||||||| Sbjct 499 AGCCGCTCCTGGAAGCTCGCTCCGCTGC-CGATCCACCGCACCGCCCACTCTGCCTTCTT 557 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 558 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 613 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 614 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 673 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 674 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 733 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 734 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 793 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 794 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 827 >seq5741 Length=29719 Score = 107 bits (118), Expect = 4e-18 Identities = 214/315 (68%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTAT----GATGTGGAGCGTTCTAT 218573 |||||| | ||||||||||| ||||||||||| ||| ||| ||||| || Sbjct 17129 GACTTCGTGGACAAGGAGCTGATTCTTTTCTC----TATTGCGGATTGCGAGCGCAGCAT 17184 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||||||| | || ||||||||||| ||||| ||||||||||||||| ||||| Sbjct 17185 CCCCAGCGCAATTGACGGCCTCAAGCCCGGCCAGCGCAAGATCCTCTTTGCCTGCTTCAA 17244 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| || | | || ||||| | ||| | | || || || | ||| || Sbjct 17245 GCGCAACCTCGTCAACGCCATCAAGGTGGTGCAGCTAGCCGGCTACGTCGCGGAACACTC 17304 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||| || ||| | ||||| | || || |||||||| ||||| Sbjct 17305 CGCCTACCACCACGGCGACCAGTCGCTCGTGCAG---ACGATCGTGGGCATGGCGCAGGA 17361 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 || || ||| | |||||| | || ||| | |||| ||||| || | ||||| Sbjct 17362 CTTCGTCGGCGGCAACAACGTTCCTCTGTTGCGCAAAGACGGCCAGTTCGGCACACGTCT 17421 Query 218811 ATTGGGTGGAAAGGA 218825 ||| || ||||| Sbjct 17422 GCAGGGCGGCAAGGA 17436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027758785902084