Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3869 185 2e-41 seq3131 185 2e-41 seq3130 185 2e-41 seq2006 122 2e-22 seq3524 87.8 3e-12 seq3391 87.8 3e-12 >seq3869 Length=3640 Score = 185 bits (204), Expect = 2e-41 Identities = 589/898 (66%), Gaps = 34/898 (4%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||| ||||| ||| |||||||||||| | |||||||| Sbjct 3597 TCATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 3538 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | || | ||||| | Sbjct 3537 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTCTCCAGCC 3478 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | | ||||| |||||||||||||||||||| ||||||||||| || Sbjct 3477 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 3418 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| |||| || || | |||||||| ||||| || ||| || |||| Sbjct 3417 TCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCG 3358 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | || |||||| ||| | |||| || | | |||||||| || || | || | Sbjct 3357 CGTCT---ACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGT 3301 Query 10231 ---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 |||| || |||| | | ||| |||||||||||||| ||| | ||||||| Sbjct 3300 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 3241 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 || ||| || ||||| ||||| || || ||||||||| | ||||||||||||| Sbjct 3240 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 3181 Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCG 10405 | |||| |||||| |||||||| | | || ||| || ||||| ||| | || Sbjct 3180 CCGAGA--AGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCG 3124 Query 10406 GT-CGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464 | ||| | | | |||||| |||||||||| | | |||||||||| Sbjct 3123 CTCCGCTGCCGATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 3064 Query 10465 CGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAA 10518 ||| || | | || ||||| | |||| | |||| || | || | Sbjct 3063 GGATCGCGTGCAGCAGCCGCAGCTTCT---CCTCGCT---GTCCGTGATGTACGTGTCCA 3010 Query 10519 GGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACA 10578 | |||| ||||| ||| ||||| | |||| | | |||| | |||| ||| Sbjct 3009 GCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACG 2950 Query 10579 TACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCAC 10636 || ||| || || | || || ||| || | || | |||||||| ||||| Sbjct 2949 CGCGCGCCTCCGGCACCTTCACGTCGCTCATGAA--GCGCTGCGCAAGGTTCTCGATCAC 2892 Query 10637 CATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC 10696 ||||| ||||||||||| |||||| | || | ||||||||||||||| ||||| | || Sbjct 2891 GATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTC 2832 Query 10697 GTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 |||||| ||||| |||||| || || | | || | || |||||||| ||||| Sbjct 2831 GTTCAG--CTTCAC-CCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 2775 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || | | || ||||||| | | | |||||| ||||| ||| |||||| Sbjct 2774 GATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACACGATCGGGAAC 2717 >seq3131 Length=4254 Score = 185 bits (204), Expect = 2e-41 Identities = 589/898 (66%), Gaps = 34/898 (4%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||| ||||| ||| |||||||||||| | |||||||| Sbjct 910 TCATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 851 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | || | ||||| | Sbjct 850 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTCTCCAGCC 791 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | | ||||| |||||||||||||||||||| ||||||||||| || Sbjct 790 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 731 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| |||| || || | |||||||| ||||| || ||| || |||| Sbjct 730 TCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCG 671 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | || |||||| ||| | |||| || | | |||||||| || || | || | Sbjct 670 CGTCT---ACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGT 614 Query 10231 ---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 |||| || |||| | | ||| |||||||||||||| ||| | ||||||| Sbjct 613 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 554 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 || ||| || ||||| ||||| || || ||||||||| | ||||||||||||| Sbjct 553 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 494 Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCG 10405 | |||| |||||| |||||||| | | || ||| || ||||| ||| | || Sbjct 493 CCGAGA--AGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCG 437 Query 10406 GT-CGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464 | ||| | | | |||||| |||||||||| | | |||||||||| Sbjct 436 CTCCGCTGCCGATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 377 Query 10465 CGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAA 10518 ||| || | | || ||||| | |||| | |||| || | || | Sbjct 376 GGATCGCGTGCAGCAGCCGCAGCTTCT---CCTCGCT---GTCCGTGATGTACGTGTCCA 323 Query 10519 GGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACA 10578 | |||| ||||| ||| ||||| | |||| | | |||| | |||| ||| Sbjct 322 GCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACG 263 Query 10579 TACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCAC 10636 || ||| || || | || || ||| || | || | |||||||| ||||| Sbjct 262 CGCGCGCCTCCGGCACCTTCACGTCGCTCATGAA--GCGCTGCGCAAGGTTCTCGATCAC 205 Query 10637 CATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC 10696 ||||| ||||||||||| |||||| | || | ||||||||||||||| ||||| | || Sbjct 204 GATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTC 145 Query 10697 GTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 |||||| ||||| |||||| || || | | || | || |||||||| ||||| Sbjct 144 GTTCAG--CTTCAC-CCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 88 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || | | || ||||||| | | | |||||| ||||| ||| |||||| Sbjct 87 GATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACACGATCGGGAAC 30 >seq3130 Length=3696 Score = 185 bits (204), Expect = 2e-41 Identities = 589/898 (66%), Gaps = 34/898 (4%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||| ||||| ||| |||||||||||| | |||||||| Sbjct 44 TCATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 103 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | || | ||||| | Sbjct 104 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTCTCCAGCC 163 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | | ||||| |||||||||||||||||||| ||||||||||| || Sbjct 164 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 223 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| |||| || || | |||||||| ||||| || ||| || |||| Sbjct 224 TCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCG 283 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | || |||||| ||| | |||| || | | |||||||| || || | || | Sbjct 284 CGTCT---ACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGT 340 Query 10231 ---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 |||| || |||| | | ||| |||||||||||||| ||| | ||||||| Sbjct 341 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 400 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 || ||| || ||||| ||||| || || ||||||||| | ||||||||||||| Sbjct 401 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 460 Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCG 10405 | |||| |||||| |||||||| | | || ||| || ||||| ||| | || Sbjct 461 CCGAGA--AGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCG 517 Query 10406 GT-CGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCT 10464 | ||| | | | |||||| |||||||||| | | |||||||||| Sbjct 518 CTCCGCTGCCGATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 577 Query 10465 CGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAA 10518 ||| || | | || ||||| | |||| | |||| || | || | Sbjct 578 GGATCGCGTGCAGCAGCCGCAGCTTCT---CCTCGCT---GTCCGTGATGTACGTGTCCA 631 Query 10519 GGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACA 10578 | |||| ||||| ||| ||||| | |||| | | |||| | |||| ||| Sbjct 632 GCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACG 691 Query 10579 TACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCAC 10636 || ||| || || | || || ||| || | || | |||||||| ||||| Sbjct 692 CGCGCGCCTCCGGCACCTTCACGTCGCTCATGAA--GCGCTGCGCAAGGTTCTCGATCAC 749 Query 10637 CATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC 10696 ||||| ||||||||||| |||||| | || | ||||||||||||||| ||||| | || Sbjct 750 GATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTC 809 Query 10697 GTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 |||||| ||||| |||||| || || | | || | || |||||||| ||||| Sbjct 810 GTTCAG--CTTCAC-CCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 866 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || | | || ||||||| | | | |||||| ||||| ||| |||||| Sbjct 867 GATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACACGATCGGGAAC 924 >seq2006 Length=20365 Score = 122 bits (134), Expect = 2e-22 Identities = 395/606 (65%), Gaps = 23/606 (4%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| || || || || | || ||||| || |||||||||| || || || || Sbjct 3688 CACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCACAGGTTCGAGCAT 3747 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| ||||| || ||| | ||| ||| || || ||||||| ||| | Sbjct 3748 TTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCA-TCCTTGTAGAGGAT 3806 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | |||||| ||||||||||||||||| | ||||| ||| || || |||| | Sbjct 3807 GAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACACCTCCTGCGCCTG 3866 Query 31880 GACGACTTTCTTC-GCACGCC-----CCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 || || || ||||||| |||| ||||||||| |||||| || | Sbjct 3867 GA------TCGTCTGCACGCCGCGGCCCTCCTTCTCGTAGCGCTCGTACAGGCGTTCAAA 3920 Query 31934 CTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGC 31993 ||||| ||| || ||| | || || || || | || || | |||| ||| Sbjct 3921 CTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAGCGTCCACTT 3980 Query 31994 GACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATT 32053 | | ||| || || ||||||||||||||||| | ||||| ||||||||| || | Sbjct 3981 GCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACAACGCGTAAAAGAGGTC 4040 Query 32054 CCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTC 32113 | |||||| ||| |||| || ||| || ||||||| |||| | | |||||| Sbjct 4041 ACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGAAGCCGAAGATGTC 4100 Query 32114 GGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTT 32170 || ||| ||||| |||||||||||||| | |||||||| | || ||||||| Sbjct 4101 GGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTC 4160 Query 32171 TGCGTA---TGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTC 32227 |||| |||| ||| ||| | | || ||||| || || | |||| ||| Sbjct 4161 CACGTAGCGGGCAG-TGT--TGTTGAAGACGCGTAGCATCGGCACCAGCCCATTCGACGT 4217 Query 32228 GCCATTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGAT 32287 ||| || || || ||| | | || | ||| |||| | || ||||||||| || Sbjct 4218 GCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCAAT 4277 Query 32288 GCCGCC 32293 |||||| Sbjct 4278 GCCGCC 4283 >seq3524 Length=768 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 448 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 505 >seq3391 Length=13044 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 12843 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 12900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921554153861280