Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3869 89.7 1e-12 seq3131 89.7 1e-12 seq3130 89.7 1e-12 >seq3869 Length=3640 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 3186 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 3243 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 3244 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 3302 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 3303 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 3362 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 3363 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 3422 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 3423 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 3482 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 3483 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 3542 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 3543 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 3597 >seq3131 Length=4254 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 499 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 556 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 557 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 615 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 616 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 675 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 676 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 735 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 736 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 795 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 796 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 855 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 856 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 910 >seq3130 Length=3696 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 455 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 398 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 397 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 339 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 338 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 279 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 278 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 219 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 218 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 159 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 158 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 99 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 98 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102796290029400