Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2006 170 2e-37 seq3869 120 4e-22 seq3131 120 4e-22 seq3130 120 4e-22 >seq2006 Length=20365 Score = 170 bits (188), Expect = 2e-37 Identities = 748/1168 (64%), Gaps = 23/1168 (2%) Strand=Plus/Plus Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 || |||||| || ||||| ||||| || ||| ||| || |||| || |||||||| Sbjct 3300 CTTCCACATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTA 3359 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 |||||||| ||| ||||| || |||||| | || ||| || || ||||| Sbjct 3360 CGGGCCCTCCTCCTTCGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTC 3419 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279 ||||| ||| |||| || ||||| | | || | || || ||| || Sbjct 3420 GAAAATCTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGAT 3479 Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339 || ||||||| || || || || || | ||| | ||||| | | ||| || Sbjct 3480 GAAGGCATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCG 3539 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || || |||||||| || || | || | ||||| || | || || || |||| Sbjct 3540 GCGCGCCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGAT 3599 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 ||| |||| | ||| | || ||| | ||| |||| || || || | Sbjct 3600 CTGCTTCGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAA 3659 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 ||| || ||||| || || || || ||||| | ||||| || |||||||| Sbjct 3660 GCGAGGCAGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTC 3719 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | ||| || || |||| || || | || || ||||| | |||||| || || ||||| Sbjct 3720 CACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTT 3779 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 |||| || ||||||||||| || ||| | ||| |||||||| | || |||| || Sbjct 3780 GCTGTTGCATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAG 3839 Query 114640 AATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 || || ||| || | | ||| |||| | || | | || ||||||| ||||| Sbjct 3840 GATCGCGAACCACACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCCTCCTTCTCGT 3898 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | ||| ||| ||||||||| || || | || ||||| || || | Sbjct 3899 AGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTG 3957 Query 114759 CT-GGGCAGAAGAGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGG 114816 || || | || | ||| ||| || | ||| || |||||||||||||| |||||||| Sbjct 3958 CTCGGATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGG 4016 Query 114817 GATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGA 114874 |||||| | || | ||||| || || ||| ||| || || | || ||| | Sbjct 4017 GATCCACAACGCGTAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCGGTGTTGCGC 4074 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 114934 || | ||| ||| | | ||| || ||||||||||| || |||||||| |||| | Sbjct 4075 TTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCG 4134 Query 114935 CCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 ||||| || || || |||||| || || | || ||| || || ||||| ||| Sbjct 4135 CCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGC 4194 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTC 115049 || || | | |||| || ||| || || || ||| || | | || | Sbjct 4195 ATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGC 4252 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 || | || | ||||| ||||| || || ||| ||| ||| ||||||||| Sbjct 4253 GGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCT 4312 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC---AGC 115166 | || | |||| || |||||||| ||| |||| |||| | ||||| ||| Sbjct 4313 TCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGC 4372 Query 115167 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 115226 | ||| || ||| | || || || |||||||||||||| || || ||||| |||| | Sbjct 4373 T---CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGA 4429 Query 115227 TACCTTGGGACATCTTATCGTAGGTCTC 115254 || | |||||| ||||||||||| Sbjct 4430 AGCCCTTCGACATCAAGTCGTAGGTCTC 4457 >seq3869 Length=3640 Score = 120 bits (132), Expect = 4e-22 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 3286 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3227 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 3226 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3167 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || | | Sbjct 3166 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCGAT 3111 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 3110 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 3057 >seq3131 Length=4254 Score = 120 bits (132), Expect = 4e-22 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || | | Sbjct 479 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCGAT 424 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 423 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 370 >seq3130 Length=3696 Score = 120 bits (132), Expect = 4e-22 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || | | Sbjct 475 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCGAT 530 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 531 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597309365965920