Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2006 100 3e-16 >seq2006 Length=20365 Score = 100 bits (110), Expect = 3e-16 Identities = 450/702 (64%), Gaps = 17/702 (2%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || || | |||||| |||||| | || || | |||| | |||||| || | |||| Sbjct 3676 GAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCAC 3735 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || |||| || ||||| ||||| ||||| ||||| ||| |||||||||| || Sbjct 3736 AGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCATCC 3795 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||| | ||| | || |||||| || | || | |||| || | |||| || | Sbjct 3796 TTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCG--CGAACCACA 3853 Query 154767 CTTC--GCGCCTCAAC--TTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAG 154822 | || |||||| | | || | || || |||| || | |||||||| Sbjct 3854 CCTCCTGCGCCTGGATCGTCTGCACGCCG--CGGCCCTCCTTCTCGTAGCGCTCGTACAG 3911 Query 154823 TTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACA-GCGGTCGGGACACATCA 154881 ||||||||| | ||| ||| || || || || | | |||| | ||||| Sbjct 3912 GCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATC-CATCA 3970 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 | |||| | | | | || || ||||| |||| || || | |||||| |||| Sbjct 3971 GCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACAACGCGT 4030 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAAT 155001 | || | ||||| || | ||| || ||| |||| ||||| | ||| || Sbjct 4031 AAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGAAGC 4090 Query 155002 CATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TC 155058 | | |||||||||||||||||||| | || ||||| | ||||| ||||| || | Sbjct 4091 CGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGC 4150 Query 155059 CTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGC 155118 | || || ||||||| || || || ||| | ||||| | || || ||| || Sbjct 4151 CGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCCCAT 4210 Query 155119 TGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAA 155178 | | ||||||||| ||||| || ||||||| | || || || || | | Sbjct 4211 TCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCA 4270 Query 155179 CGCCCAAACCTCC-GCCGTATT-TAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACAT 155236 ||| | || || |||| || ||| ||||||| ||| || || ||||| || Sbjct 4271 GGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCAC--TCCTTCAGCGTATCGTAAAT 4328 Query 155237 TCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGA 155278 || | ||||||||| || ||| | | | |||||| ||||| Sbjct 4329 GCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGA 4370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499607801302560