Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2006 208 8e-49 >seq2006 Length=20365 Score = 208 bits (230), Expect = 8e-49 Identities = 497/750 (66%), Gaps = 6/750 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| |||||||| || || ||| ||| |||||| ||||| ||| || Sbjct 4418 GCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCTTG 4359 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | |||| |||| |||| ||| |||| ||| | || ||||| || || | Sbjct 4358 GTCGCCTCGAAGGACGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTC 4299 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || | || ||| || | || || || | Sbjct 4298 ATCAGCAAGGCGGCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGC 4239 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || || ||||| || || || || || || ||||| || ||||||||| Sbjct 4238 TACATCGCCGGCACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAAC 4179 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||||||||||||||| || || | | | ||||| | ||||| || || Sbjct 4178 AACACTGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTAC 4119 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG---AACCACGGC 94248 || ||||| |||||||| ||| | | ||| | |||| ||| ||| |||| Sbjct 4118 CTTGAGCCGTGGCACGCCGACATCTTCGGCTTCTT---GCTGCTGAAGCGCAACACCGGC 4062 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || || | ||| | |||||||| ||||| | ||| | |||||||| || ||| Sbjct 4061 AAGGACGACCAGCGCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCATG 4002 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || ||| | | |||| || | ||| | ||| || || ||| Sbjct 4001 AAGCGTGTGAAGAGCGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCTG 3942 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 |||| | || | |||||| | |||| | || ||||| | ||||| Sbjct 3941 AGCGACTGCTACGGCGAGGAGTTTGAACGCCTGTACGAGCGCTACGAGAAGGAGGGCCGC 3882 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | || || | || | || ||||| |||| | || ||| | ||| Sbjct 3881 GGCGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCGCAGATCGAG 3822 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| ||| | |||| | | |||||| | |||| |||||| |||||| || || Sbjct 3821 ACGGGCGTGCCTTTCATCCTCTACAAGGATGCATGCAACAGCAAGTCGAACCAGAAGAAC 3762 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||||| ||||||| ||||||||||||||||| ||||| || || || || Sbjct 3761 CTTGGCACGATCAAATGCTCGAACCTGTGCACCGAGATTGTGGAGTACACCTCGCCCGAG 3702 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 |||| ||| ||||| ||||| | ||| ||| Sbjct 3701 GAGACTGCCGTGTGCAACCTCGCCTCGATC 3672 Score = 102 bits (112), Expect = 8e-17 Identities = 198/284 (70%), Gaps = 15/284 (5%) Strand=Plus/Minus Query 95098 CTTG-TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTT 95156 |||| |||| || |||||||| || || ||| |||||||||| ||||| ||||||| || Sbjct 3219 CTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAATAACGAGTGCTT 3160 Query 95157 CGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCAT 95216 ||| ||||||||||| ||| | ||| | || || | || || ||||| || | Sbjct 3159 CGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGTGGCGAGTTCCCGGTGGT 3100 Query 95217 CAACAAGCACCTCCTACGGGACCTGA--CGTCTCTGGGTGTGTGGGGTGAC-AAGGTCAA 95273 |||||| ||||| | |||||| | || | | | |||| | ||| | | ||| Sbjct 3099 GAACAAGTACCTCGTGATGGACCTCATCCGACGCGGCCTGTGGAACGAGACGATGCGCAA 3040 Query 95274 -GA-ACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CCCGCAAATACCGGAGG 95329 || | || || || |||||||||| ||| || || | || || || || | Sbjct 3039 CGAGATCATCTCATA-----CAACGGCTCCATCCTGACAATTGACGGC--ATCCCCGACG 2987 Query 95330 ACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || |||||| ||||||| |||||||||||||| || |||||| Sbjct 2986 ACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGC 2943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494686565747040