Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2006 367 1e-96 seq3869 172 5e-38 seq3131 172 5e-38 seq3130 172 5e-38 >seq2006 Length=20365 Score = 367 bits (406), Expect = 1e-96 Identities = 1167/1778 (66%), Gaps = 61/1778 (3%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAA 152768 ||||| | ||| ||||||| || |||| |||||| ||||||||||| ||||| ||| Sbjct 2776 GCCGCCGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAG 2835 Query 152769 TTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGG 152828 | | ||||| || ||| | | || || | || |||||| || ||||| || Sbjct 2836 AAGAGCATCGACGTGATCTGGCCCGAGGTGGGGCTCTGCAGGAACAGGTTCAACGACTGC 2895 Query 152829 CTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCA---TGCGTTTTGCCTTC 152885 ||| || ||| | | |||||| ||||| || |||| |||| | || Sbjct 2896 GACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGGA--- 2952 Query 152886 ATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGA 152945 |||||||| |||| ||| | | || | | || || || || ||||| || | Sbjct 2953 ATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAGG 3012 Query 152946 ATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATT-TCGGGCGTGTACACGTTCAGTTT 153004 || ||||| |||| || | || |||| || || || | | ||| | || Sbjct 3013 ATGGAGCCGTTGTATGAGATGATCTCGTTGCGCATCGTCTCGT-TCCACAGGCCGCGTCG 3071 Query 153005 AATGAGGTC-ATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTC 153063 |||||||| ||| | | ||||| ||| ||||| | |||||||| ||| || || | Sbjct 3072 GATGAGGTCCATC-ACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACACGGC 3130 Query 153064 TCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCG 153123 | || | || ||||| || || ||| | ||||||||||| || || || | || Sbjct 3131 GTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACG 3190 Query 153124 TGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATG 153182 | | ||||| ||||| ||||| ||| | || || |||| |||| | || | Sbjct 3191 TCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCT 3250 Query 153183 TCGTCCTTCAACGCCTG--CCAATCCCACAGCGCCGACGGTGTCGCG-------TTCCAC 153233 || ||||||| | ||| ||| ||||| | |||| | | ||| |||||| Sbjct 3251 TC-TCCTTCA--GACTGTCCCAGTCCCAGCG-GCCGCTGTTCGGGCGGGGGTTCTTCCAC 3306 Query 153234 ATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCG 153293 |||||| |||| | | || | |||||||||||||| || || ||| ||| Sbjct 3307 ATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCC 3366 Query 153294 TCGCGTTGGGCCAGTTCGCAGCTA-GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGAT 153352 || | |||| || || | | ||||| | |||| | |||| ||||| ||| || Sbjct 3367 TCCTCCTTCGCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAAT 3425 Query 153353 TTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGC 153412 | || | ||| ||| | || || | |||| |||||||| | ||||| Sbjct 3426 CTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGC 3485 Query 153413 GTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGC 153472 || ||||| ||||| | || | ||||| || || | | ||||||||| | ||| Sbjct 3486 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGC 3545 Query 153473 GCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTT 153532 || | | || |||| ||||| ||||| | ||| |||||||| | | || Sbjct 3546 CGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTT 3605 Query 153533 AGTTATCGCCTTA-AGTTTCTCGAAATCATAGGTCATTTCG----TCGACGCGT--ACGC 153585 || | ||| || || || | ||| ||| ||| || | ||| ||| Sbjct 3606 CGTGA-CGCTGTAGAGCAGCTGGTGATC------CATCTCGCGCTTCTCCTCGTTCACGA 3658 Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACT 153645 | ||| || || || || || || || || ||||| ||||| |||| | |||||| Sbjct 3659 AGCGAGGCAGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACT 3718 Query 153646 GCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTT 153705 ||| ||||||| ||| ||||| |||||| || ||| | || | ||| || | Sbjct 3719 CCACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACT 3778 Query 153706 TGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGA 153765 ||| ||||| || || ||| |||| ||| | || |||| ||||||| |||| || | Sbjct 3779 TGCTGTTGCATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAA 3838 Query 153766 CGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCT 153822 ||| |||| || |||||||| | | | |||| ||||||||| ||| Sbjct 3839 GGATCGCGAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCCTTCT 3895 Query 153823 CGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA-C 153881 |||| ||||||||||| || |||||||| ||||||||||||||| || || || || Sbjct 3896 CGTAGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATG 3955 Query 153882 TGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCC 153941 || | |||| |||||||| |||| | | ||| || || || ||||||||| || Sbjct 3956 TGCT-CGGATCCATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCT 4014 Query 153942 GGCACCCAGAGCGCGTACATGAGGT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGC 153999 || | ||| | |||||| | ||||| || |||| || || ||| ||| |||||| Sbjct 4015 GGGATCCACAACGCGTAAAAGAGGTCACGGGCGCGCTG--GTCGTCCTTGCCGGTGTTGC 4072 Query 154000 GTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGG 154059 | ||||| | | || |||||||||||||||| || |||| ||| ||||| | || Sbjct 4073 GCTTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGG 4132 Query 154060 CACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCA 154116 | || || ||||| |||||||| || |||| ||| | | |||||||||||||| | Sbjct 4133 CGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTA 4192 Query 154117 CCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGC 154176 ||| || |||| || | | |||||||| || ||| | ||||||| || || Sbjct 4193 GCATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGC 4252 Query 154177 GCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTC 154234 | | | ||||||| | |||||||||||| |||| | ||| | ||| | ||||| || Sbjct 4253 GGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCG--CCTTGCTGATGACTGCGCACTC 4310 Query 154235 GCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGA 154294 |||||| ||| |||||||||||||| ||||| | ||| |||||| ||||| Sbjct 4311 CTTCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGA 4370 Query 154295 ACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACA 154353 | ||| ||||| | |||| || || |||||||| || | |||||||| || | Sbjct 4371 GCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAA 4430 Query 154354 GTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGC 154413 | || | ||||| | ||| || ||| || || | || ||| | || |||| Sbjct 4431 GCCCTTCG-ACATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGC 4489 Query 154414 CGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451 |||| || ||||||| || | ||||||||||| ||| Sbjct 4490 CGAGGGCAACGCGCAGGAAGAGCTGCTGCGGACGCTCG 4527 >seq3869 Length=3640 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 3222 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 3281 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 3282 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 3341 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 3342 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 3400 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 3401 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 3458 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 3459 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 3517 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 3518 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 3577 Query 52838 TAAG 52841 | || Sbjct 3578 TCAG 3581 >seq3131 Length=4254 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 535 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 594 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 595 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 654 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 655 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 713 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 714 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 771 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 772 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 830 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 831 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 890 Query 52838 TAAG 52841 | || Sbjct 891 TCAG 894 >seq3130 Length=3696 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 419 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 360 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 359 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 300 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 299 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 241 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 240 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 183 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 182 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 124 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 123 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 64 Query 52838 TAAG 52841 | || Sbjct 63 TCAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225651769280