Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3869 107 2e-18 seq3131 107 2e-18 seq3130 107 2e-18 >seq3869 Length=3640 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 3142 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 3200 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 3201 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 3260 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 3261 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 3320 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 3321 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 3379 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 3380 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 3439 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 3440 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 3496 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 3497 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 3556 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 3557 CGAGAAGAAGGTGGGCGAGTAT 3578 >seq3131 Length=4254 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 455 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 513 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 514 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 573 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 574 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 633 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 634 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 692 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 693 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 752 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 753 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 809 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 810 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 869 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 870 CGAGAAGAAGGTGGGCGAGTAT 891 >seq3130 Length=3696 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 499 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 441 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 440 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 381 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 380 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 321 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 320 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 262 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 261 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 202 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 201 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 145 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 144 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 85 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 84 CGAGAAGAAGGTGGGCGAGTAT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475465589165760