Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2006 123 2e-23 >seq2006 Length=20365 Score = 123 bits (136), Expect = 2e-23 Identities = 405/619 (65%), Gaps = 13/619 (2%) Strand=Plus/Minus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCG-AC-CGAAACTTA 122983 || ||||||| || | ||| | || | |||| | ||||| ||| || ||| || || Sbjct 4507 TCCTGCGCGTTGCCCTCGGCATCCATGTCGACGACCT-GAAAA-GCGTACGCGAGACCTA 4450 Query 122984 CGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCAC 123043 ||| |||||||| | || ||||||||||| | || || | ||| ||||||||| Sbjct 4449 CGACTTGATGTCGAAGGGCTTCTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCAC 4390 Query 123044 GAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGG 123103 | | ||| ||| || ||||| || ||| || ||| | || ||||||||| ||| Sbjct 4389 GCCGAAGCCGCAGATGAGCTCGTGCTTCTTGGTCGCCTCGAAGGACGACAGCATCGACGG 4330 Query 123104 TATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGT 123163 || || || || || || ||||| | || ||| | ||||||||| ||| | Sbjct 4329 CATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCGGCCGGCGGCATTGGCCT 4270 Query 123164 GAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAA--TCGCC 123221 | |||||||| || | | | ||| ||| |||| |||| |||| | ||| Sbjct 4269 GCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCCGGCACGAACGGCACGTCGAA 4210 Query 123222 TCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGC 123281 | ||||| | | ||||| || || | ||| ||| | | || |||| ||||||||| Sbjct 4209 T--GGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCCCGCTACGTGGACCAGGGC 4152 Query 123282 GGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTAC 123338 ||| || ||||| ||||| | || | || || || |||||||||| || | | | Sbjct 4151 GGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATCTTC 4092 Query 123339 GATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTG 123398 | || || | || ||||||| || ||| || || ||||| || | || Sbjct 4091 GGCTTCTTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGCGCCCGTGACCTCTTT 4032 Query 123399 TACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCG 123458 ||||| || ||| | || || |||| ||| || || || ||| ||| |||| || Sbjct 4031 TACGCGTTGTGGATCCCAGACCTGTTCATGAAGCGTGTGAAGAGCGAGGGCAAGTGGACG 3972 Query 123459 CTCATGTGTCCCGATC-GGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGA 123517 || ||| | |||| | || || || |||||||| |||||| | ||||||| Sbjct 3971 CTGATG-GATCCGAGCACATGCCCGGGGCTGAGCGACTGCTACGGCGAGGAGTTTGAACG 3913 Query 123518 GTTGTACGCGCAATACGAG 123536 |||||| || |||||| Sbjct 3912 CCTGTACGAGCGCTACGAG 3894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969729163040