Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2006 194 2e-44 seq3869 107 2e-18 seq3131 107 2e-18 seq3130 107 2e-18 >seq2006 Length=20365 Score = 194 bits (214), Expect = 2e-44 Identities = 856/1335 (64%), Gaps = 35/1335 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||| | ||||| |||||||| || || || | ||| || | || || Sbjct 3136 TAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGAC 3195 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| | ||| |||||| | || ||| | | | ||| Sbjct 3196 GCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCC 3255 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTCCCACATATCAAA 116075 || || ||||||||| || | ||| | || | || |||||| || || Sbjct 3256 TTCAGACTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTCGAA 3314 Query 116076 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 116135 ||| ||||| || ||| || || |||| || ||||| || |||||||| ||| Sbjct 3315 CTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTT 3374 Query 116136 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 ||||| || |||||| | || ||| || || ||||| ||||| ||| || Sbjct 3375 CGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTT 3434 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || || ||||| | | || | || || ||| || || ||||||| || Sbjct 3435 CACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAG 3494 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 || || || || | ||| | ||||| | | ||| || || || |||||||| Sbjct 3495 GCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGTCTCCAC 3554 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || | ||||| || | || || || |||| ||| |||| Sbjct 3555 CGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACGCT 3614 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | ||| | || ||| | ||| |||| || || || | ||| || ||||| Sbjct 3615 GTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCGAT 3674 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || || || || ||||| | ||||| || |||||||| | ||| || || || Sbjct 3675 CGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCA 3734 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 || || || | || || ||||| | |||||| || || ||||| |||| || ||||| Sbjct 3735 CAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCATC 3794 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||||||| || | ||| |||||||| | || |||| || || || ||| || Sbjct 3795 CTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACAC 3854 Query 116616 AT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | | ||| |||| | || | | || ||||||| |||||| ||| ||| Sbjct 3855 CTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCCTCCTTCTCGTAGCGCTCGTACAGGC 3913 Query 116675 CCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCT-GGACAGAAGA 116731 |||||||| || || ||| | || ||||| || || | || ||| | | Sbjct 3914 GTTCAAACTCCTCGCCGTAGCAGTCGCT--CAGCCCCGG-GCATGTGCTCGGATCCATCA 3970 Query 116732 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 | | ||| ||| || | ||| || || ||||||||||| |||||||||||||| | ||| Sbjct 3971 GCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAACGCG 4029 Query 116791 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | ||||| || || ||| ||| || || | || ||| | || | ||| | Sbjct 4030 TAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGA 4087 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 || | | ||| || ||||||||||| || |||||||| |||| | |||||||| || Sbjct 4088 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 4147 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || || | || || ||| || ||||| ||||| || | | | Sbjct 4148 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 4207 Query 116966 CATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 ||| || ||| || || || ||| || | | | || | || | ||| | Sbjct 4208 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 4265 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 ||||| ||||| || || ||| ||| ||| |||||||||| | || | |||| Sbjct 4266 GTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTA 4325 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGTGG 117140 || || ||||| ||| |||| |||| | ||||| |||| ||| || || Sbjct 4326 AATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGG 4382 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 | | || || || |||||||||||||| || || ||||| |||| | || | ||||| Sbjct 4383 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACAT 4442 Query 117201 CTTATCGTAGGTCTC 117215 | ||||||||||| Sbjct 4443 CAAGTCGTAGGTCTC 4457 >seq3869 Length=3640 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 3286 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3227 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 3226 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3167 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || | | | Sbjct 3166 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCGATC 3110 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 3109 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 3057 >seq3131 Length=4254 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || | | | Sbjct 479 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCGATC 423 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 422 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 370 >seq3130 Length=3696 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || | | | Sbjct 475 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCGATC 531 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 532 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613461769791840