Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3869 134 2e-26 seq3131 134 2e-26 seq3130 134 2e-26 >seq3869 Length=3640 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 3569 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 3510 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 3509 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 3450 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 3449 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 3391 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 3390 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 3331 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 3330 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 3271 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 3270 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 3211 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 3210 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 3152 Query 160061 AA 160062 || Sbjct 3151 AA 3150 >seq3131 Length=4254 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 882 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 823 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 822 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 763 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 762 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 704 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 703 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 644 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 643 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 584 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 583 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 524 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 523 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 465 Query 160061 AA 160062 || Sbjct 464 AA 463 >seq3130 Length=3696 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 72 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 131 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 132 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 191 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 192 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 250 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 251 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 310 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 311 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 370 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 371 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 430 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 431 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 489 Query 160061 AA 160062 || Sbjct 490 AA 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795096318757440