Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2128 226 4e-54 seq3087 223 4e-53 seq2006 82.4 1e-10 >seq2128 Length=11495 Score = 226 bits (250), Expect = 4e-54 Identities = 471/698 (67%), Gaps = 15/698 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || || | ||| || || ||||| ||||| || || || |||| ||| Sbjct 1799 TCGAAGTCCTCGCCGCCGAGGTGGGTGTCGCCCGCCGTCGCCTTCACCTCGAAGACGCCT 1858 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||| || | | || || ||||| ||||| || || |||||||| || || || ||| Sbjct 1859 TTTTCGATCGTCAGCAGCGTCACATCGAACGTGCCGCCGCCCAGGTCGAAGATCAGCACG 1918 Query 7577 TTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | ||| | | | |||||| || | ||||||||||| || |||||||| || Sbjct 1919 TTCCTCTCGCCCTTGTCGTTCTTGCGGTCCATGCCGTACGCGATGGCGGCCGCCGTCGGC 1978 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || || || || ||| || || ||||| || | || || ||||| || || Sbjct 1979 TCGTTGATGATGCGCAGCACGTTGAGACCTGCAATCGTGCCAGCGTCCTTCGTTGCGTGA 2038 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || |||| ||||| ||||| || || ||||| ||||| |||||| | || | | || Sbjct 2039 CGCTGCGCGTCGTTGAAGTACGCGGGCACCGTGACGACAGCGTCCTTCACGGTTGTGCCA 2098 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | ||||| | || ||||| || || ||||||| || ||||| || | Sbjct 2099 AGGTAGGCCTCCGCTGTCTCCTTCATCTTCTGCAGCACCATCGCAGAGATCTCCTCGGGA 2158 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT---ATCCGCAGCA 7870 ||| ||| ||| | | || || | || | || || ||| | || Sbjct 2159 AAGAACGTCTTCAAGGAACCCTGGTACTCGACGTTGATGACCGGCTTGCCATC--CTTCA 2216 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | | ||||| | | ||| | ||||| || | || | | |||| |||| Sbjct 2217 C----GGTCACCTTGAAAGGCCAGTGCTTCATGTCCGCCTGCAGGTCCGGGTCGTCAAAC 2272 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| | ||||| || || || | ||||| | || ||||| || || Sbjct 2273 TTGCGGCCGATCATCCGCTTCGCGTCGAAGATGGTGTTGTGCGGATTCATCGCCACCTGA 2332 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 |||||||| || || |||| || || || | ||||| |||||||||||||| || Sbjct 2333 TTCTTCGCGGCATCGCCGACGAGGCGCTC---TGTCTCCGTGAACGCGACGTACGACGGC 2389 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 ||||| || || || ||||||||||| || || || || ||||||| | |||||||| Sbjct 2390 GTCGTGCGGTTGCCCTGGTCGTTCGCGATGATCTCGACCTGGTCGTTCTTGAAGACGCCG 2449 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| ||||| || || | ||||||||||| || Sbjct 2450 ACACACGAGTACGTCGTGCCCAGGTCAATACCGATGGC 2487 >seq3087 Length=1897 Score = 223 bits (246), Expect = 4e-53 Identities = 787/1218 (65%), Gaps = 21/1218 (2%) Strand=Plus/Minus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || ||||| | || |||||||| || | | || | || || Sbjct 1209 CGTCGAGAAGATCTGGCTCTTCTTCGTCGGGATCGTCGTGTTGCGCTTGATCAGCGCCGT 1150 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | || || || || | || || | ||| || |||||||||| || | ||| Sbjct 1149 CATCACGCCGCCGGCCGTCTCAATGCCCAGCGTCAGCGGCGTCACGTCCAGCAGCAGCAG 1090 Query 6988 GTCTTGAACAGATTCGTTCCCTTCAC-CCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCG 7045 | | | | | | | | ||| | ||| | ||| || ||| || |||| || ||| Sbjct 1089 GCCCTC--CGTCTGCTTGCTCTTGCCGCCGGTCAGAATGAAGGCCTGAACCGCAGCGCCG 1032 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||| |||||||| || | || ||||| || || ||| || | ||| Sbjct 1031 TACGCCACGGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGCCGAAGAAGTCC 972 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || | |||||||| || || || || || |||| |||| || | | Sbjct 971 GACACAAGGCTCTGCACCTTCGGGATACGCGTGGAGCCGCCCACCAGCACGACATCGTGC 912 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || ||||| | ||| | || || || || | || | Sbjct 911 ACGGAGCGCTTGTCCATCTTCGCGTCCTGGAGCACGCGCTCCACCGGCTGGATCGTGCTG 852 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| ||| ||||| ||||| || || || || || || | | | ||| || Sbjct 851 CGGAACAGGTCGCCGCACAGCTCCTCGAAGCGCGCGCGCGTGATCGTGGCCTGGAAGTCC 792 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 ||| |||| | | | || || || | || | || | || || || | ||| ||| Sbjct 791 ACGTTGTCGAACAGTGCGTCGATCTCGACCGTCGCCTGCGTCGCGGACGACAGCGTGCGC 732 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || |||||||| |||||||| || | ||| || || || || || | || | || Sbjct 731 TTGGCGCGCTCGCACGCCGTGCGCAGACGGCGCAGCGCGCGGTGGCTCGACGACAGGTCC 672 Query 7406 TT---CTTATGTTTACGTTTAAACTCTTCAGAGAAGT--GTCGAAGGAGTCTCGAATCGA 7460 || ||| | || || || ||||| || |||| ||| | || | ||||| Sbjct 671 TTGCCCTTGTTCTTGCGCTTGAACTCCTCGCTGAAGAACGTC--ACCAGCCGGTTATCGA 614 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || || ||||| | ||| || || || ||||| || || || ||||| || || | Sbjct 613 AGTCCTCGCCACCGAGGTGGGTGTCGCCGTTCGTCGCCTTCACCTCGAAGATGCCGCCGT 554 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 | || | | || || ||||| ||||| || || |||||||| || || || ||||| Sbjct 553 CGATCGTCAGCAGCGTCACATCGAACGTGCCGCCGCCCAGGTCGAAGATCAGCACGTTGC 494 Query 7581 TATCGT---CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | |||| | | ||| || || ||||||||||| || |||||||| || |||| Sbjct 493 GCTCCTTGCCGTCGTCGCCCTTGTCCAGGCCGTACGCGATGGCGGCCGCCGTCGGCTCAT 434 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || || || || | ||| || ||||| || | || || |||||||| || || | Sbjct 433 TGATGATGCGCAGCACCTCCAGACCTGCAATCGTGCCGGCGTCCTTCGTCGCCTGACGCT 374 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 |||| ||||| |||||||| || ||||| || || || | | | || | ||| || || | Sbjct 373 GCGAGTCGTTGAAGTAGGCGGGCACCGTCACCACGGCCTTCTTCACCTGCTTGCCAAGGT 314 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || || | || ||||| || || |||||||| ||||| || | || | Sbjct 313 AAGCCTCGGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCGTGA 254 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC--CGCAGCACCGGG 7875 || ||| || |||| || | || | |||| || || || ||| | || Sbjct 253 ACGTCTTCTCCTCGCCGTGGAACTGCACCACGATCACAGGCTTGTCGTCGC-CCTTCGTC 195 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | | ||||| | | ||| | ||||| || | || || ||| ||||| | Sbjct 194 G-TCACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGCACAACGGAGTCGCTGAACTTGCG 136 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || || ||||| || || || || ||||| | |||||||| || |||||||| Sbjct 135 GCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTGCGGGTTCATCGCCACCTGGTTCTT 76 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || ||||| ||||| || || || |||||||||||||| || ||||| Sbjct 75 CGCGGCATCGCCGATTAGACGCTC---GGAGTCGGTGAACGCGACGTACGACGGCGTCGT 19 Query 8056 TCGATTCCCTTGGTCGTT 8073 || || || |||||||| Sbjct 18 GCGGTTGCCCTGGTCGTT 1 >seq2006 Length=20365 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGT 105884 ||| ||||| | ||||| || || ||| ||| ||||| || ||||| || | || Sbjct 4260 GTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGT 4319 Query 105885 ATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTG 105944 ||||||||| |||||||| || || ||||| || | || ||| ||||| ||| || Sbjct 4320 ATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTG 4379 Query 105945 TGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGA 106004 || | || || || || ||||| || || || || || || |||| || || ||||| Sbjct 4380 CGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGA 4439 Query 106005 TAACGCTTCGTATGTTTC 106022 | | ||||| || || Sbjct 4440 CATCAAGTCGTAGGTCTC 4457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635085768416160