Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3869 100 4e-16 seq3131 100 4e-16 seq3130 100 4e-16 >seq3869 Length=3640 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || ||| || ||| || ||||| ||||||||||| || || ||||||||| Sbjct 3135 GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCT 3194 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 | | ||||| |||||||| || || ||||| || || ||| ||||||||| ||| Sbjct 3195 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 3254 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || || |||||||| || ||| || |||||| Sbjct 3255 TCGCGCGACGAGGGCCTGCACACGGACTTTGCG 3287 >seq3131 Length=4254 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || ||| || ||| || ||||| ||||||||||| || || ||||||||| Sbjct 448 GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCT 507 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 | | ||||| |||||||| || || ||||| || || ||| ||||||||| ||| Sbjct 508 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 567 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || || |||||||| || ||| || |||||| Sbjct 568 TCGCGCGACGAGGGCCTGCACACGGACTTTGCG 600 >seq3130 Length=3696 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || ||| || ||| || ||||| ||||||||||| || || ||||||||| Sbjct 506 GAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCT 447 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 | | ||||| |||||||| || || ||||| || || ||| ||||||||| ||| Sbjct 446 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 387 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || || |||||||| || ||| || |||||| Sbjct 386 TCGCGCGACGAGGGCCTGCACACGGACTTTGCG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620696434025280