Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2006 172 6e-38 seq3676 84.2 3e-11 seq3607 84.2 3e-11 >seq2006 Length=20365 Score = 172 bits (190), Expect = 6e-38 Identities = 1075/1704 (63%), Gaps = 43/1704 (3%) Strand=Plus/Plus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 |||||||| ||| || || |||| ||||| ||||| || || ||| | ||| | | Sbjct 2781 CGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAGAAGAG 2840 Query 109458 CATTGAAGAGAGTTTGGAAAGTG-TCGGACTCTCCATAAACAAGTTCATCGACTGAGACT 109516 ||| || | || | ||| | | | || |||| || |||| ||||| |||||| |||| Sbjct 2841 CATCGACGTGA-TCTGGCCCGAGGTGGGGCTCTGCAGGAACAGGTTCAACGACTGCGACT 2899 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTT 109573 | |||||| | | || || || ||||||||||| | | | || | | ||| | Sbjct 2900 GGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGG---AATCT 2956 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| || || ||| | | ||||| || ||||| ||| | | || | | || | Sbjct 2957 CCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAGGATGG 3016 Query 109634 AGCC-----ACCAGCCT-TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCT 109687 |||| | || || | || | | || |||| ||| || || ||| Sbjct 3017 AGCCGTTGTATGAGATGATCTCGTTGCG---CATCGTCTCGTTCCAC---AGGCCGCGTC 3070 Query 109688 TTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTGCGT 109746 |||| || || || | |||||| ||||| || || ||| |||| || Sbjct 3071 GGATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACA-CGG 3129 Query 109747 CGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCA 109806 || | ||||||||| | ||| |||| ||||| ||||| || ||||| ||||| || | Sbjct 3130 CGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGAC 3189 Query 109807 GTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACC 109866 || || || |||||||| || |||| | || ||| || | || | | | ||| Sbjct 3190 GTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACC 3249 Query 109867 CGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC--CCACA 109924 ||| || |||||| || | || || || || | | || ||||| Sbjct 3250 TTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTG--TTCGGGCGGGGGTTCTTCCACA 3307 Query 109925 TATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCT 109984 | || || || | |||| || ||| |||||||| ||||||||| |||| Sbjct 3308 TGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCT 3367 Query 109985 CAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATAT 110044 | ||| |||| ||| || ||||| | || || || || ||||| ||||| | Sbjct 3368 CCTCCTTCGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCT 3427 Query 110045 GAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACA 110103 ||| |||| | | |||| ||| | ||||||| || | || |||| | || || Sbjct 3428 CAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGA-TGAAGGCA 3486 Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163 ||||| || ||||| || || | || | ||||| | |||||| ||| || || Sbjct 3487 TCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGCC 3546 Query 110164 GTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTC 110223 || || || ||||| |||||||||||||||| || || || || || | |||| Sbjct 3547 GTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTC 3606 Query 110224 GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGG 110283 |||| | ||| | || ||| | | | |||||| || || | || Sbjct 3607 GTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGC 3666 Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343 || || || || || || |||||||| | |||||| || |||||| |||| ||| Sbjct 3667 AGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATC 3726 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTG 110403 || || |||| ||| || | || || || | ||||||||| ||||| ||| |||| Sbjct 3727 TCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTG 3786 Query 110404 CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCC 110463 ||||||||||| ||||| ||| | || || || || |||| |||| || || || Sbjct 3787 CATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCG 3846 Query 110464 TTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGT 110522 ||| || | | ||| | || | ||| || | || |||| |||||| Sbjct 3847 AACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCCTCCTTCTCGTAGCGCTC 3905 Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT-TGTCGGGAC 110581 ||||| | ||||| |||| ||||| || || ||| || | || ||| Sbjct 3906 GTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAG-CCCCGGGCATGTGCTCGGAT 3964 Query 110582 AGAAGAGGGACCAATT-TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCAC 110640 | || | ||| || || | ||| || || | ||||||||||||||| || |||||| Sbjct 3965 CCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCAC 4023 Query 110641 ATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCC 110700 | ||| | || ||||||||| || || || | || |||| | ||| | Sbjct 4024 AACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGC 4083 Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG- 110759 || ||| | | ||| || | |||||| || || || || || |||| || ||||| || Sbjct 4084 AAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGC 4143 Query 110760 --ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 || || |||||| || ||||| || ||| |||||||| | ||||| || | Sbjct 4144 TTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACC 4203 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC---ACGAATGTCG 110874 | |||| || || || || || | || | | ||| || |||| | Sbjct 4204 AGCCCATTCGACGTGCCGTTCGTGCCGGCGA---TGTAGCTGCCGGCGGAGCGGATGTTG 4260 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 || | |||| ||||| || || ||| ||| || || ||| ||||| | || ||| Sbjct 4261 TGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTA 4320 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 | ||||| || || || || |||| ||| | | ||||| || |||||| Sbjct 4321 TCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGC 4380 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGAC 111054 || ||||| || || |||||||| || || || || || |||| | || | ||| Sbjct 4381 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGAC 4440 Query 111055 ATCTTGTTGTATGTGTCGAGTGCG 111078 ||| || ||| || ||| || || Sbjct 4441 ATCAAGTCGTAGGTCTCGCGTACG 4464 >seq3676 Length=26652 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 24205 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 24264 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 24265 CTGTTGGGAGCA-CTTTT 24281 >seq3607 Length=1041 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 148 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 207 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 208 CTGTTGGGAGCA-CTTTT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588932386327200