Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2006 136 5e-27 seq3869 87.8 2e-12 seq3131 87.8 2e-12 seq3130 87.8 2e-12 seq1840 86.0 7e-12 seq5833 82.4 9e-11 >seq2006 Length=20365 Score = 136 bits (150), Expect = 5e-27 Identities = 544/845 (64%), Gaps = 11/845 (1%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || || ||||| || |||||||| | | Sbjct 3664 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACA 3723 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| ||| || | || ||||| || | ||||| ||||| ||| || Sbjct 3724 ATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTG 3783 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| |||||||||||||| ||| | ||| |||||||| |||| |||| || || Sbjct 3784 TTGCATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATC 3843 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || |||||| | | ||| |||| | || | | || |||||| |||||| Sbjct 3844 GCGAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCCTCCTTCTCGTAGCG 3902 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT-TGTCTG 106754 ||| ||| |||||||||||| || |||| || || || || | || | Sbjct 3903 CTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCG 3961 Query 106755 GACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || | || | ||| ||| || | ||| || || ||||||||||| |||||||| ||| Sbjct 3962 GATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATC 4020 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 |||| | ||||||| || | || || || | || |||| | | | Sbjct 4021 CACAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 4080 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 | ||| | | ||| || |||||||| |||||||| || || |||| | ||||| Sbjct 4081 AGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTG 4140 Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || || || | || | || ||||| || ||| ||| || ||||| ||||| || Sbjct 4141 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGC 4200 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATC 107049 | | |||| || || || || || || || | || | | | Sbjct 4201 ACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGGATGTT 4259 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | ||||| ||||| || || ||| ||| ||| || |||||| | || || Sbjct 4260 GTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGT 4319 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | || || |||| ||| ||| ||||| ||||| | |||||| | |||||| Sbjct 4320 ATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTG 4379 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 107229 ||| | || || || || ||||||||||| || || ||||| |||| | || | || Sbjct 4380 CGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGA 4439 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 |||| |||||| ||||| || | | ||| || | |||||||||| ||| || Sbjct 4440 CATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGGGCAAC 4499 Query 107290 ACGCA 107294 |||| Sbjct 4500 GCGCA 4504 >seq3869 Length=3640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 3286 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3227 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 3226 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3167 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 3166 CCCTCCAC 3159 >seq3131 Length=4254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 479 CCCTCCAC 472 >seq3130 Length=3696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 475 CCCTCCAC 482 >seq1840 Length=15009 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136163 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 136222 ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| Sbjct 10021 AGCTCCCATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAAT 9962 Query 136223 CCAGGTAGGAGC 136234 || ||| ||||| Sbjct 9961 CCTGGTGGGAGC 9950 >seq5833 Length=18992 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 10549 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 10490 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 10489 CAGGTAGGAG 10480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589937111921760