Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5662 138 9e-28 >seq5662 Length=28022 Score = 138 bits (152), Expect = 9e-28 Identities = 402/606 (66%), Gaps = 20/606 (3%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| |||||||| ||||| || ||||||||| ||||| || || ||||| Sbjct 3283 AGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGC 3342 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 || | ||| |||||| || || || | | || |||| ||| || || || || Sbjct 3343 ACCAGCTCACCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATAC 3402 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||| |||||||| || || ||||| |||||||| | || | |||||| ||| ||| Sbjct 3403 GAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAGGAACGCTGGTACAGCATGCAC 3462 Query 29971 GAGAGCTCTC-CGTC-----GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGA 30024 || |||||| ||| | ||||||| ||||| | | |||||| || || || Sbjct 3463 GACAGCTCTTTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCAGG 3522 Query 30025 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 30084 ||||| || ||| | |||||||| ||| | || || || | ||| | |||| Sbjct 3523 GCCATCTGGTTCAACGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTGGG 3582 Query 30085 TTGTTCCTGATGAGGTCCACGG-CGTTTTGCAGCTGATCCACCCCCATCCCCGA-GTAGT 30142 || ||||| ||||| || ||| | ||||||||| || || ||| ||||| Sbjct 3583 TTCGCCCTGAGCGTCTCCACAATCGACTTG-ATCTGATCCACGCCT-TCTCCGTCGTAGT 3640 Query 30143 CTGCC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30201 ||| | || | || ||||| | || ||||| || | ||||||||| ||||| || || Sbjct 3641 TTGCGTCGCA-GCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGGGG 3699 Query 30202 CCCAGGTCTCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 || ||||| | |||| ||| || || || | |||| | || | | || Sbjct 3700 CCGAGGTC---CATTTCCTTGTTTTCCGTCAAACCGCGGCTGTCGAGGAACGCGCGTGAG 3756 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 ||||| ||||||| || | | |||| || | ||| | | ||| || ||| Sbjct 3757 GCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCA 3816 Query 30319 CTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||||| || Sbjct 3817 CGCAAGAACCACAGCAGCTCCTCACAC-ACGCCACGCCAGAAGACACGCTTCGTCGTCAG 3875 Query 30378 GAGGGG 30383 ||||| Sbjct 3876 CAGGGG 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408588098320052