Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3869 174 3e-38 seq3131 174 3e-38 seq3130 174 3e-38 seq2006 138 2e-27 >seq3869 Length=3640 Score = 174 bits (192), Expect = 3e-38 Identities = 536/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Plus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| | | |||| | ||| | | | | |||| Sbjct 2784 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGCTGAA--CGACGGGGAGC 2841 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| |||| | || || || |||| ||||| Sbjct 2842 GGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGA 2901 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| || || ||| || |||||| | | |||| ||||| Sbjct 2902 ACCT-TGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTT-TACGG 2959 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 2960 GTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTA 3019 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 3020 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 3078 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| |||||| |||||| || ||||||| |||| ||||| | || | Sbjct 3079 TCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCG-GAGCG--AGCTTCCAGG 3135 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | ||| || || |||||||||||||| ||| || ||||| ||| || Sbjct 3136 AGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCT 3194 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 3195 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 3254 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||| | Sbjct 3255 TCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAG 3314 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| ||| || ||| | |||||| Sbjct 3315 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTAGACGCGGTGAACATCGAGCG 3373 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 3374 CGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGG 3432 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| ||| | |||||| || | | | | Sbjct 3433 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATC-GCTGGGGCTGGAGAAGCAC 3491 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 3492 TACAACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 3548 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 3549 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 3580 >seq3131 Length=4254 Score = 174 bits (192), Expect = 3e-38 Identities = 536/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Plus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| | | |||| | ||| | | | | |||| Sbjct 97 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGCTGAA--CGACGGGGAGC 154 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| |||| | || || || |||| ||||| Sbjct 155 GGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGA 214 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| || || ||| || |||||| | | |||| ||||| Sbjct 215 ACCT-TGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTT-TACGG 272 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 273 GTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTA 332 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 333 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 391 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| |||||| |||||| || ||||||| |||| ||||| | || | Sbjct 392 TCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCG-GAGCG--AGCTTCCAGG 448 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | ||| || || |||||||||||||| ||| || ||||| ||| || Sbjct 449 AGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCT 507 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 508 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 567 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||| | Sbjct 568 TCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAG 627 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| ||| || ||| | |||||| Sbjct 628 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTAGACGCGGTGAACATCGAGCG 686 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 687 CGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGG 745 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| ||| | |||||| || | | | | Sbjct 746 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATC-GCTGGGGCTGGAGAAGCAC 804 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 805 TACAACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 861 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 862 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 893 >seq3130 Length=3696 Score = 174 bits (192), Expect = 3e-38 Identities = 536/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| | | |||| | ||| | | | | |||| Sbjct 857 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGAAGCTGAA--CGACGGGGAGC 800 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| |||| | || || || |||| ||||| Sbjct 799 GGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGCAGCGACGGCATCGTGATCGAGA 740 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| || || ||| || |||||| | | |||| ||||| Sbjct 739 ACCT-TGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTT-TACGG 682 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 681 GTTCCAGCTGATGATGGAGAACATCCACTCAGAGACGTACTCGGTGCTGCTGGACACGTA 622 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 621 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 563 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| |||||| |||||| || ||||||| |||| ||||| | || | Sbjct 562 TCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGGCAGCG-GAGCG--AGCTTCCAGG 506 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | ||| || || |||||||||||||| ||| || ||||| ||| || Sbjct 505 AGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGC-GCT 447 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 446 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATC 387 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||| | Sbjct 386 TCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAG 327 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| ||| || ||| | |||||| Sbjct 326 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTAGACGCGGTGAACATCGAGCG 268 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 267 CGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGG 209 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| ||| | |||||| || | | | | Sbjct 208 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATC-GCTGGGGCTGGAGAAGCAC 150 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 149 TACAACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 93 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 92 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 61 >seq2006 Length=20365 Score = 138 bits (152), Expect = 2e-27 Identities = 514/794 (65%), Gaps = 25/794 (3%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| |||||||| ||| || ||| |||| | ||||| || || || Sbjct 3678 GGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCACAG 3737 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||| ||||| || || |||| || || || ||||||| ||| || ||||| Sbjct 3738 GTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCATCCTT 3797 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 |||||| || || || |||| ||||| | ||| | | | || ||| | ||| | || Sbjct 3798 GTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACACCTC 3857 Query 221893 TCTGGCGCTC-ACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCG--GTATAGAG 221949 ||| || | |||| | | | ||||| ||| || || | ||| || | Sbjct 3858 -CTGCGCCTGGATCGTCTGCACGCCGCGGCCCTC---CTTCTCGTAGCGCTCGTACAG-G 3912 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | ||||||| || ||||| ||| ||| || || || || ||| |||||| Sbjct 3913 CGT-TCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAG 3971 Query 222010 ACTCCAGTGCTTGTTGTCT---TTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 |||| |||| || || || | || |||||| ||||| |||||||||| ||| Sbjct 3972 CGTCCA---CTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACAACGC 4028 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | |||||| || | || ||||| || ||| |||| |||| | |||| ||| || Sbjct 4029 GTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGAA 4088 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 | || ||||| |||||||||||||| || || ||||| | ||||| ||||| Sbjct 4089 GCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACC 4148 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||| ||||| |||| | | ||| | |||||||| ||| || |||| ||||| | Sbjct 4149 GCCGCCCTGGTCCA-CGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 4207 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT----ACTG 222301 | || || ||||| ||||| ||||| ||| ||| | | ||| || Sbjct 4208 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGT 4267 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 |||| ||| || || ||||| || ||| | ||||| ||| || || || Sbjct 4268 GCAG----GCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCG 4323 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||||| || || ||| ||||| | | || || || || |||||| | Sbjct 4324 TAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCGGC 4383 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 || | | | |||||| || || || || ||||||| || ||| ||||| | |||||| Sbjct 4384 TTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACATC 4443 Query 222482 AGATCGTACGTCTC 222495 | ||||| ||||| Sbjct 4444 AAGTCGTAGGTCTC 4457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928776019042560