Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3087 228 1e-54 seq2128 221 2e-52 >seq3087 Length=1897 Score = 228 bits (252), Expect = 1e-54 Identities = 957/1500 (64%), Gaps = 18/1500 (1%) Strand=Plus/Plus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || ||||| || ||||| || || || |||||||| || || || || || ||||| Sbjct 1 AACGACCAGGGCAACCGCACGACGCCGTCGTACGTCGCGTTCACCGACTCCGAGCGTCTA 60 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | || |||||||| || || ||| || |||||||| ||| || || || |||||| Sbjct 61 ATCGGCGATGCCGCGAAGAACCAGGTGGCGATGAACCCGCACAACACGGTGTTCGACGCG 120 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 ||||| || ||||| |||||||| || || || | || || ||| ||||| Sbjct 121 AAGCGCCTGATTGGCCGCAAGTTCAGCGACTCCGTTGTGCAGGCGGACATGAAGCACTGG 180 Query 195554 TCTTATGAAGTTGTTCCCGGTGTG-GCTGATAAGCCTATGATTAATGTTGAATTTCACGG 195612 | | | ||| || || | | | || |||||| |||| || | || ||||| Sbjct 181 CCCT-TCAAGGTGACGACGAAGGGCGACGACAAGCCTGTGATCGTGGTGCAGTTCCACGG 239 Query 195613 TGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGA 195672 ||| |||| || | || || || || || |||||| || | ||||||||||| Sbjct 240 CGAGGAGAAGACGTTCACGCCGGAGGAGATCAGCTCGATGGTGCTGCTGAAGATGAAGGA 299 Query 195673 GACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTA 195732 ||| || || ||| | | || || ||||| | || || ||||| || || || || Sbjct 300 GACGGCCGAGGCTTACCTTGGCAAGCAGGTGAAGAAGGCCGTGGTGACGGTGCCCGCCTA 359 Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| || || || || |||||||| |||||||| | | ||||| ||||| | Sbjct 360 CTTCAACGACTCGCAGCGTCAGGCGACGAAGGACGCCGGCACGATTGCAGGTCTGGAGGT 419 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852 || | || |||||||| || || ||||| || || || || || ||||||||| | | Sbjct 420 GCTGCGCATCATCAATGAGCCGACGGCGGCCGCCATCGCGTACGGCCTGGACAAGGGCGA 479 Query 195853 GGACG---AAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTC 195909 |||| | || || || ||||||| || || || || || ||||| ||||| | Sbjct 480 CGACGGCAAGGAGCGCAACGTGCTGATCTTCGACCTGGGCGGCGGCACGTTCGATGTGAC 539 Query 195910 ACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCT 195969 || || | || || || || || ||||| || ||||| || || || || || || Sbjct 540 GCTGCTGACGATCGACGGCGGCATCTTCGAGGTGAAGGCGACGAACGGCGACACCCACCT 599 Query 195970 AGGTGGTGAAGATTTCGATGCACGTCTTCT-CCGTCATTTGTCTGATGAGTTCCGTCGAA 196028 ||||| || || |||||| || || | ||| || | || |||||| || | Sbjct 600 CGGTGGCGAGGACTTCGATAACCGGCTGGTGACGTTCTTCAGC-GAGGAGTTCAAGCGCA 658 Query 196029 AGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCAT 196085 |||| ||| || || | || | | | || || || || || | || || | Sbjct 659 AGAACAAGGGCAAGGACCTGTCGTCGAGCCACCGCGCGCTGCGCCGTCTGCGCACGGCGT 718 Query 196086 GTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGT 196145 | || || ||||| || || || || || || | || | | ||| ||||| || | Sbjct 719 GCGAGCGCGCCAAGCGCACGCTGTCGTCCGCGACGCAGGCGACGGTCGAGATCGACGCAC 778 Query 196146 TGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACT 196205 |||| ||| | |||||| | | || || || || || || || || ||| | | Sbjct 779 TGTTCGACAACGTGGACTTCCAGGCCACGATCACGCGCGCGCGCTTCGAGGAGCTGTGCG 838 Query 196206 CTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGG 196265 || |||| | | || | || || || | || || | ||||| ||||||| Sbjct 839 GCGACCTGTTCCGCAGCACGATCCAGCCGGTGGAGCGCGTGCTCCAGGACGCGAAGATGG 898 Query 196266 ATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTC 196325 | ||| || | || | || || ||||| || || || ||||| |||||| | Sbjct 899 ACAAGCGCTCCGTGCACGATGTCGTGCTGGTGGGCGGCTCCACGCGTATCCCGAAGGT-- 956 Query 196326 AACAGATGCTT---TCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGG 196382 |||| ||| || ||||||| || || | ||||| | |||||||| | Sbjct 957 -GCAGAGCCTTGTGTCGGACTTCTTCGGCGGCAAGGAGCTGAACAAGAGCATCAACCCCG 1015 Query 196383 ATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATA 196442 | || || || || || || || || |||||||| ||||| | || | | | | Sbjct 1016 ACGAGGCCGTGGCGTACGGCGCTGCGGTTCAGGCCTTCATTCTGACCGGCGGCAAGAGCA 1075 Query 196443 ATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAG 196502 | | | | || ||||| || || || | || | | ||||| |||| || | Sbjct 1076 AGCAGACGGAGGGCCTGCTGCTGCTGGACGTGACGCCGCTGACGCTGGGCATTGAGACGG 1135 Query 196503 CGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAAC 196562 | || || || ||||| | || | | ||||| || || ||||| |||||| | Sbjct 1136 CCGGCGGCGTGATGACGGCGCTGATCAAGCGCAACACGACGATCCCGACGAAGAAGAGCC 1195 Query 196563 AAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAG 196622 | |||| || ||||| | || || || || || || || || || || | || || | Sbjct 1196 AGATCTTCTCGACGTACGCGGACAACCAGCCCGGCGTGCACATCCAGGTGTTCGAGGGCG 1255 Query 196623 AACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCA 196681 | || | | || | ||||| ||| || || || ||||| || | || || || Sbjct 1256 AGCG-TGCGATGACGAAGGACTGCCACTCCCTGGGCACATTCGACCTGTCCGGCATCCCG 1314 Query 196682 GCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATT 196741 | || || | || || || |||||| | || |||||| | ||||| || || || Sbjct 1315 CCGGCGCCGCGCGGCGTGCCGCAGATTGAGGTGACCTTCGACCTGGACGCGAACGGCATC 1374 Query 196742 CTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAAT 196801 || |||||| | || ||||| |||| | ||||| | |||| || || || Sbjct 1375 CTGAACGTCTCCGCGGAGGAGAAGGGCACGGGCAAGCGCAACCAGATCACCATCACGAAC 1434 Query 196802 GACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTAC 196861 |||||||| || || ||||| || || || || ||||| | || ||| |||||| Sbjct 1435 GACAAGGGCCGCCTGAGCAAGGACGAGATCGAGCGCATGGTGAACGACGCGTCCAAGTAC 1494 >seq2128 Length=11495 Score = 221 bits (244), Expect = 2e-52 Identities = 466/692 (67%), Gaps = 6/692 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || ||||| || | || || || ||||| ||||| || || | | || || | Sbjct 2487 GCCATCGGTATTGACCTGGGCACGACGTACTCGTGTGTCGGCGTCTTCAAGAACGACCAG 2428 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| ||||| || ||||| || || || |||||||| || || || Sbjct 2427 GTCGAGATCATCGCGAACGACCAGGGCAACCGCACGACGCCGTCGTACGTCGCGTTCACG 2368 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || ||||| || |||||||| || |||||| || ||||| || ||| Sbjct 2367 GAGACAGAGCGCCTCGTCGGCGATGCCGCGAAGAATCAGGTGGCGATGAATCCGCACAAC 2308 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| ||||||||||| | || || ||||||||| || | | | || | Sbjct 2307 ACCATCTTCGACGCGAAGCGGATGATCGGCCGCAAGTTTGACGACCCGGACCTGCAGGCG 2248 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| ||| | ||| || ||| || || ||||| | || || Sbjct 2247 GACATGAAGCACTGGCCTT-TCAAGGTGA--CCGTGAAGGATGGCAAGCCGGTCATCAAC 2191 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || | || ||| ||| || |||||| || || || | |||||| || Sbjct 2190 GTCGAGTACCAGGGTTCCTTGAAGACGTTCTTTCCCGAGGAGATCTCTGCGATGGTGCTG 2131 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 |||||||||||||| ||||| | | | | || | ||| ||||| || || || || Sbjct 2130 CAGAAGATGAAGGAGACAGCGGAGGCCTACCTTGGCACAACCGTGAAGGACGCTGTCGTC 2071 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || | || || || || || |||||||||| | ||| Sbjct 2070 ACGGTGCCCGCGTACTTCAACGACGCGCAGCGTCACGCAACGAAGGACGCTGGCACGATT 2011 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| || | || ||||| || || || ||||| || || || || || Sbjct 2010 GCAGGTCTCAACGTGCTGCGCATCATCAACGAGCCGACGGCGGCCGCCATCGCGTACGGC 1951 Query 195839 CTGGA---CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 |||| ||||||| | | | || | || || ||||||| || || || || || Sbjct 1950 ATGGACCGCAAGAACGACAAGGGCGAGAGGAACGTGCTGATCTTCGACCTGGGCGGCGGC 1891 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 ||||| ||||| | || || | || ||| || | ||||| || ||||| || || Sbjct 1890 ACGTTCGATGTGACGCTGCTGACGATCGAAAAAGGCGTCTTCGAGGTGAAGGCGACGGCG 1831 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || || || || || ||||| Sbjct 1830 GGCGACACCCACCTCGGCGGCGAGGACTTCGA 1799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657813685289280