Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2006 300 1e-76 seq3869 104 2e-17 seq3131 104 2e-17 seq3130 104 2e-17 >seq2006 Length=20365 Score = 300 bits (332), Expect = 1e-76 Identities = 1157/1780 (65%), Gaps = 57/1780 (3%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 ||||| | || ||||||| || |||| |||||| |||||||| || ||||| || Sbjct 2776 GCCGCCGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAG 2835 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGG-CTCCGCCACGAAAAGATTAAACGATTG 146690 | | ||||| || || | | | || || ||| || | ||| || || ||||| || Sbjct 2836 AAGAGCATCGACGTGATCTGGCCCGAGGTGGGGCTCTGC-AGGAACAGGTTCAACGACTG 2894 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCA---TGCGTTTTGTCTT 146747 || || ||| | | ||||||| ||||| || |||| |||| | || | Sbjct 2895 CGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGGAAT 2954 Query 146748 CATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTG 146807 | ||||| |||| ||| ||| |||| | | || || || || ||||| | | Sbjct 2955 C---TCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAG 3011 Query 146808 AATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATT-TCGGGCGTGTAAAGGTTTAGTT 146866 || ||||| |||| | | || ||| || || || | | | ||| || Sbjct 3012 GATGGAGCCGTTGTATGAGATGATCTCGTTGCGCATCGTCTCGT-TCCACAGGCCGCGTC 3070 Query 146867 TAATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGT 146925 |||||||| |||| | |||| || ||||| | |||||||| || ||||| Sbjct 3071 GGATGAGGTCCATCACG-AGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACACGG 3129 Query 146926 CTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCC 146985 | | || | || ||||| ||||| || |||| |||||||| | || || | | Sbjct 3130 CGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGAC 3189 Query 146986 GTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGAT 147044 || | ||||| ||||| ||||| ||| | || || |||| ||| | ||| | Sbjct 3190 GTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATC-AC 3248 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCA-CATCGAC-------GAGGGCGTCACGTTCCAC 147096 || ||||||| | | | ||||||||| | | | | ||| || |||||| Sbjct 3249 CTTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTC--TTCCAC 3306 Query 147097 ATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCG 147156 |||||| |||| || | || | |||||||||||||| ||| || ||| || Sbjct 3307 ATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCC 3366 Query 147157 TCGCGCTGCGCCAATTCACAGCTT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGAT 147215 || || ||||| || || | ||||| | ||| | |||| ||||| ||| || Sbjct 3367 TCCTCCTTCGCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAAT 3425 Query 147216 TTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGC 147275 | ||| | ||| ||| | || || | |||| ||||| | | ||||| Sbjct 3426 CTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGC 3485 Query 147276 ATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCG 147334 ||| |||| ||||| | || | ||||| ||| || | || | ||||||||| || Sbjct 3486 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCAT-GTTGCTGCGGCGCG 3544 Query 147335 CGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTT 147394 | || | | || |||| |||||| || || | ||| ||||| || | | Sbjct 3545 CCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCT 3604 Query 147395 TAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTG 147452 | || | | | ||| || | ||| | || || |||| | ||| ||| | | Sbjct 3605 TCGTGACGCTGTAGAGCAGCTGGTGATCC-ATCTCGCG-CTTCTCCTCGTTCACGAAGCG 3662 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC 147512 || ||||| || || || ||||| ||||| ||||| |||| | |||||| ||| Sbjct 3663 AGGCAGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCAC 3722 Query 147513 GATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCG 147572 || |||| ||||||||| |||||| || || | || | ||| || || | Sbjct 3723 AATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCT 3782 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 ||||| || || ||| |||| ||| | || |||| ||||||| |||| |||| ||| Sbjct 3783 GTTGCATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGAT 3842 Query 147633 A---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTA 147689 |||| || |||||||| | | | |||| ||||||||| || ||||| Sbjct 3843 CGCGAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCCTTCTCGTA 3899 Query 147690 CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGAT 147748 |||||||||| || |||||||| ||||||||||| ||| || || || || || | Sbjct 3900 GCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCT 3959 Query 147749 GCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCA 147808 |||| |||||||| |||| || | || || || || ||| ||||| || || | Sbjct 3960 -CGGATCCATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGA 4018 Query 147809 CCCACAGCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTT 147866 ||||| |||||| | || || || ||| || || || ||| ||||||| || Sbjct 4019 TCCACAACGCGTAAAAGAGGTCACGGGCGCGCTGG--TCGTCCTTGCCGGTGTTGCGCTT 4076 Query 147867 CAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCAC 147925 || | ||| | | | |||||||||||||||| || |||| ||| ||||| | || | Sbjct 4077 CAGCAGCAAGAAGCCGA-AGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGC 4135 Query 147926 CTTTACGCTTTCCGC---CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCA 147982 | || ||||| |||| ||||||| || | ||| | ||||||| || ||||| | || Sbjct 4136 CCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCA 4195 Query 147983 TGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCA 148042 | || |||| || ||| |||||||| ||| ||| | ||||||| || || | Sbjct 4196 TCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGA 4255 Query 148043 CTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCC 148100 | |||||||| | |||||||||||| |||| | ||| | ||| | ||||| || Sbjct 4256 TGTTGTGCACGTGCAGGCCAATGCCGCCGGCCG--CCTTGCTGATGACTGCGCACTCCTT 4313 Query 148101 CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACA 148160 || || ||| ||||||||||||||||||| || | | | ||| || ||||| | Sbjct 4314 CAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT 4373 Query 148161 CATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--T 148218 ||| ||||| || |||| || || ||| ||||| || | |||||||| || || Sbjct 4374 CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCC 4433 Query 148219 TTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCC 148278 || || ||||| | || ||||| || || | ||||||| | || ||||| Sbjct 4434 CTTCGA--CATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCG 4491 Query 148279 AGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA 148318 || || ||||||| || | ||||| || || ||| ||| Sbjct 4492 AGGGCAACGCGCAGGAAGAGCTGCTGCGGACGCTCGACAA 4531 >seq3869 Length=3640 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 3222 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 3281 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 3282 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 3340 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 3341 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 3398 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 3399 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 3456 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 3457 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 3516 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 3517 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 3576 Query 47269 ATAAG 47273 || || Sbjct 3577 ATCAG 3581 >seq3131 Length=4254 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 535 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 594 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 595 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 653 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 654 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 711 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 712 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 769 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 770 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 829 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 830 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 889 Query 47269 ATAAG 47273 || || Sbjct 890 ATCAG 894 >seq3130 Length=3696 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 419 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 360 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 359 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 301 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 300 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 243 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 242 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 185 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 184 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 125 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 124 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 65 Query 47269 ATAAG 47273 || || Sbjct 64 ATCAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575906940640