Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5662 178 2e-39 >seq5662 Length=28022 Score = 178 bits (196), Expect = 2e-39 Identities = 399/594 (67%), Gaps = 14/594 (2%) Strand=Plus/Plus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 ||||| | |||||| || || ||||||||| ||||| || || |||||||| | || Sbjct 3292 TTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCA 3351 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 ||||| || || ||| | | || | || || |||||||| || ||| ||| Sbjct 3352 CCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATG 3411 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 || || || || || ||||||||||| | || | |||||||||| |||||| ||||| Sbjct 3412 TTAAACGGCACGCCGAGGCCCATGTCGCAGGAACGCTGGTACAGCATGCACGACAGCTCT 3471 Query 147097 C-CGTCGGC-----CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 ||| | |||||| ||||||| || | |||||| |||||||| ||||| | Sbjct 3472 TTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGG 3531 Query 147151 GGCAGGTCCGCG---GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207 || |||| |||||||| || | || | || ||| | | | |||||| | Sbjct 3532 TTCAA---CGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCC 3588 Query 147208 TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCG 147267 | | | || | || | || | | ||| |||||||| | || ||||||||| || Sbjct 3589 CTGAGCGTCTCCACAATCGACTTGATCTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCG 3648 Query 147268 CAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCG 147327 ||| || |||| ||| || ||||| | ||||||||||||||| || || || ||||| Sbjct 3649 CAGCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGGGGCCGAGGTCC 3708 Query 147328 CCGGGCTTTCTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTC 147386 ||| | | || || || || | | | ||| ||| || | || ||| | |||| Sbjct 3709 ATTTCCTTGTTTTCCGTCAAACCGCGGCTG-TCGAGGAACGCGCGTGAGGCGTTGCCGTC 3767 Query 147387 CCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCA 147446 ||| || | ||||| | | ||| || | || ||| || || | |||||| Sbjct 3768 CCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCA 3827 Query 147447 GAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 ||||||||||| | || || | ||| ||||| | ||| || ||||||||||| Sbjct 3828 CAGCAGCTCCTCACACACGCCACGCCAGAAGACACGCTTCGTCGTCAGCAGGGG 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583444792713600