Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2006 93.3 1e-13 seq3869 87.8 6e-12 seq3131 87.8 6e-12 seq3130 87.8 6e-12 >seq2006 Length=20365 Score = 93.3 bits (102), Expect = 1e-13 Identities = 441/687 (64%), Gaps = 14/687 (2%) Strand=Plus/Minus Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893 || ||||| ||| | ||||| | ||| ||||| | |||||| || | || | || Sbjct 4346 GACGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCG 4287 Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953 ||||||| | || || || | |||| | ||| || ||||| || ||| | Sbjct 4286 GCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACAT-CGCCGG 4228 Query 254954 -ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTC 255011 |||||||| ||| | ||| | | || ||| | || || ||||||||| || | Sbjct 4227 CACGAACGGCACGTCGAATGGGC-TGGTGCCGATGCTACGCGTCTTCAACAACACTGCCC 4169 Query 255012 GCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGT 255071 ||||||| || || || ||||| || ||| || || ||| || | ||||| ||||||| Sbjct 4168 GCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGT 4109 Query 255072 GGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGA 255131 ||||||||||||| | || || |||||| ||| ||||||| || || | | Sbjct 4108 GGCACGCCGACATCTTCGGCTTCTTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC 4049 Query 255132 TCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAAC 255191 |||||| ||| ||| ||| | ||| | || ||||| || || ||||| | Sbjct 4048 GCGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCAT--GAAGCGTGTGAA 3991 Query 255192 GAGACGAG---ACCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTT 255248 ||| |||| | |||| || ||| ||| | | || || || || ||||| | Sbjct 3990 GAG-CGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCTGAGCGACTGCT 3932 Query 255249 GGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTAC-GC 255307 || || ||||||||| ||||| | |||||| | ||||| ||| | | Sbjct 3931 ACGGCGAGGAGTTTGAACGCCTGTACGAGCGCTACGAGAAGGAGGGCCGCGGCGTGCAGA 3872 Query 255308 CAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATG 255367 | | | | ||| || || | ||| | |||| | |||| | || || || || Sbjct 3871 CGA-TCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCGCAGATCGAGACGGGCGTG 3813 Query 255368 CCGTTCCTATTGCACAAAGA-CCACATAAACGCACGGTCGAACCAACGCCACCGCGGTAC 255426 || ||| | | |||| || || || ||| ||||||||| ||| || || Sbjct 3812 CCTTTCATCCTCTACAAGGATGCATGCAACAGCA-AGTCGAACCAGAAGAACCTTGGCAC 3754 Query 255427 GATACGCGGCTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGC 255486 ||| ||||||||||||||||||||||| | | |||| || | | ||| || Sbjct 3753 GATCAAATGCTCGAACCTGTGCACCGAGATTGTGGAGTACACCTCGCCCGAGGAGACTGC 3694 Query 255487 CGTTTGCAACTTGGCGTCCATCTCGCT 255513 ||| |||||| | || || ||| |||| Sbjct 3693 CGTGTGCAACCTCGCCTCGATCGCGCT 3667 >seq3869 Length=3640 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 3198 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 3257 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 3258 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 3317 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 3318 AAGCTGCC 3325 >seq3131 Length=4254 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 511 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 570 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 571 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 630 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 631 AAGCTGCC 638 >seq3130 Length=3696 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 443 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 384 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 383 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 324 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 323 AAGCTGCC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588215443312180