Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2006 125 9e-24 seq3869 87.8 2e-12 seq3131 87.8 2e-12 seq3130 87.8 2e-12 seq1840 86.0 8e-12 seq5833 82.4 1e-10 >seq2006 Length=20365 Score = 125 bits (138), Expect = 9e-24 Identities = 872/1387 (63%), Gaps = 35/1387 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||| | || || ||||| || ||||| || | ||| || | || || Sbjct 3135 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGA 3194 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| ||| || ||| || | || || | | | || Sbjct 3195 CGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTC 3254 Query 110827 CTTGAGAACATCCCAGTCGTAG----------TTGAGCTTGGTTTCACCTTCCCACATGT 110876 ||| ||| |||||||| || | | || || ||| | |||||||| Sbjct 3255 CTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTC----TTCCACATGT 3310 Query 110877 CAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA-GGAACCTTGG 110935 | ||||| || | ||| ||| |||||| |||| ||||| || || || ||| Sbjct 3311 CGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCT 3370 Query 110936 GCTTCAGCCAATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 110994 |||| |||| || || | |||||||| | ||| || ||||| || || || Sbjct 3371 CCTTC-GCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTC 3428 Query 110995 AGCATTCATCTCCTTGGCTTCATC--TGAATCAAATGCGTAGCGGCA-CAAAATAAATAC 111051 ||| |||| | || || || | ||| | || | | || ||| ||| || || | Sbjct 3429 AGCGTTCACCCTCTGCGCCTCTGCACTGA--CGAAGG-GCAGGCGCAGCAAGATGAAGGC 3485 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 |||||| || || || || ||||| || | ||| | || ||||| || ||||| Sbjct 3486 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGC 3545 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 ||||| || || || | || | ||| ||||| ||||| || || || | ||| Sbjct 3546 CGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTT 3605 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 |||| | || | | ||| | ||| |||| || || || | || Sbjct 3606 CGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGG 3665 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || ||||| || || | ||||| || || ||||| || |||||||| | ||| Sbjct 3666 CAGCGCGATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAAT 3725 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| || | || ||||| || | ||||| ||||| ||| |||| Sbjct 3726 CTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTT 3785 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| |||||||||||||| ||| | ||| |||||||| |||| || | || || || Sbjct 3786 GCATGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGC 3845 Query 111412 CTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 ||| || | | ||| |||| | || | | || |||||| |||||| Sbjct 3846 GAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCCTCCTTCTCGTAGCGCT 3904 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT-TGTCTGGA 111529 ||| ||| |||||||||||| || |||| || || || || | || ||| Sbjct 3905 CGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCGGA 3963 Query 111530 CAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | || | ||| ||| || | || || || ||||||||||| |||||||| ||||| Sbjct 3964 TCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCA 4022 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 || | ||||||| || | || || || | || |||| | | | Sbjct 4023 CAACGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAG 4082 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 | ||| | | ||| || |||||||| |||||||| || || |||| | ||||| || Sbjct 4083 CAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCG 4142 Query 111709 ---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 4143 CTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCAC 4202 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCAT 111824 | |||| || || || || || || || | || | | | | Sbjct 4203 CAGCCCATTCGACGTGCCGTTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGGATGTTGT 4261 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | | ||||| ||||| || || ||| ||| ||| || |||||| | || || Sbjct 4262 GCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTAT 4321 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | || || |||| ||| ||| ||||| ||||| | |||||| | |||||||| Sbjct 4322 CGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCG 4381 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACA 112004 | | || || || || ||||||||||| || || ||||| |||| | || | |||| Sbjct 4382 GCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACA 4441 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 || |||||| ||||| || | | ||| || | |||||||||| || || | Sbjct 4442 TCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGGGCAACGC 4501 Query 112065 GCATGAA 112071 ||| ||| Sbjct 4502 GCAGGAA 4508 >seq3869 Length=3640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 3286 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 3227 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 3226 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 3167 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 3166 CCCTCCAC 3159 >seq3131 Length=4254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 479 CCCTCCAC 472 >seq3130 Length=3696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 475 CCCTCCAC 482 >seq1840 Length=15009 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| Sbjct 10021 AGCTCCCATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAAT 9962 Query 145341 CCAGGTAGGAGC 145352 || ||| ||||| Sbjct 9961 CCTGGTGGGAGC 9950 >seq5833 Length=18992 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 10549 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 10490 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 10489 CAGGTAGGAG 10480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627985494230400