Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2006 167 3e-36 seq3869 118 1e-21 seq3131 118 1e-21 seq3130 118 1e-21 >seq2006 Length=20365 Score = 167 bits (184), Expect = 3e-36 Identities = 850/1335 (64%), Gaps = 35/1335 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||| | ||||| |||||||| || || || | ||| || | || || Sbjct 3136 TAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGAC 3195 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| | ||| ||| || | || | | | | ||| Sbjct 3196 GCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCC 3255 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATATCAAA 118354 || ||| ||||||||| || | ||| | || | || |||||| || || Sbjct 3256 TTCAGACTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTCGAA 3314 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||| ||||| || ||| || || |||| || ||||| || |||||||| ||| Sbjct 3315 CTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTT 3374 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 ||||| || |||||| | || ||| || || || || ||||| ||| || Sbjct 3375 CGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTT 3434 Query 118475 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 118534 || || ||||| | | || | || || ||| || || ||||||| || Sbjct 3435 CACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAG 3494 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG--GTCTCC 118592 || || || || | ||| | ||||| | | ||| || || | | ||| |||||| Sbjct 3495 GCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTG--CTGCGGCGCGCCGTCTCC 3552 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||| || | || || || |||| ||| |||| Sbjct 3553 ACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACG 3612 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 | ||| | || ||| | ||| |||| || || || | ||| || ||| Sbjct 3613 CTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCG 3672 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || || || || ||||| | ||||| || |||||||| | ||| || ||| Sbjct 3673 ATCGAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTG 3732 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 |||| ||| || | || || ||||| | |||||| || || ||||| |||| || ||| Sbjct 3733 CACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCA 3792 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| || ||| | ||| |||||||| | || |||| || || || ||| Sbjct 3793 TCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCAC 3852 Query 118893 ACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || | | || |||| | || | | || ||||| | |||||| ||| || Sbjct 3853 ACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCCTCCTTCTCGTAGCGCTCGTACAG 3911 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-GGGCAGAAGA 119010 | ||||||||| || || | || ||||| || || | || || | | Sbjct 3912 GCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCGGATCCATCA 3970 Query 119011 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 | | ||| ||| || | ||| || || ||||||||||| |||||||||||||| | ||| Sbjct 3971 GCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAACGCG 4029 Query 119070 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | ||||| || || ||| ||| || || | || ||| | || | ||| | Sbjct 4030 TAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGA 4087 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 || | | ||| || ||||||||||| || |||||||| |||| | ||||| || || Sbjct 4088 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 4147 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| || || | |||||| ||| || || || ||||| || | | | Sbjct 4148 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 4207 Query 119245 CATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| || ||| || || || ||| || | | || | || | ||| | Sbjct 4208 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 4265 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 ||||| ||||| || || ||| ||| ||| ||||||||| | || | |||| Sbjct 4266 GTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTA 4325 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGAGG 119419 || || ||||| ||| |||| |||| | ||||| |||| ||| || || Sbjct 4326 AATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGG 4382 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 119479 | | || || || ||||||||||| || || || ||||| |||| | || | ||||| Sbjct 4383 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACAT 4442 Query 119480 CTTGTCGTAGGTCTC 119494 | |||||||||||| Sbjct 4443 CAAGTCGTAGGTCTC 4457 >seq3869 Length=3640 Score = 118 bits (130), Expect = 1e-21 Identities = 352/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 3578 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 3519 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 3518 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 3461 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 3460 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 3402 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 3401 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 3342 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 3341 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 3285 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 3284 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 3225 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 3224 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 3165 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || | | ||| Sbjct 3164 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCGATCCA 3108 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 3107 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 3057 >seq3131 Length=4254 Score = 118 bits (130), Expect = 1e-21 Identities = 352/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 891 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 832 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 831 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 774 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 773 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 715 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 714 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 655 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 654 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 598 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 597 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 538 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 537 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 478 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || | | ||| Sbjct 477 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCGATCCA 421 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 420 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 370 >seq3130 Length=3696 Score = 118 bits (130), Expect = 1e-21 Identities = 352/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 63 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 122 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 123 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 180 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 181 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 239 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 240 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 299 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 300 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 356 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 357 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 416 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 417 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 476 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || | | ||| Sbjct 477 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCGATCCA 533 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 534 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618389404873440