Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3869 105 8e-18 seq3131 105 8e-18 seq3130 105 8e-18 >seq3869 Length=3640 Score = 105 bits (116), Expect = 8e-18 Identities = 192/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 3012 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 3071 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| | | || | ||| | Sbjct 3072 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGG--CAGCGGAGCGAGC- 3128 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 3129 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 3188 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 3189 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 3248 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 3249 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 3287 >seq3131 Length=4254 Score = 105 bits (116), Expect = 8e-18 Identities = 192/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 325 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 384 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| | | || | ||| | Sbjct 385 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGG--CAGCGGAGCGAGC- 441 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 442 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 501 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 502 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 561 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 562 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 600 >seq3130 Length=3696 Score = 105 bits (116), Expect = 8e-18 Identities = 192/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 629 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 570 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| | | || | ||| | Sbjct 569 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATCGG--CAGCGGAGCGAGC- 513 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 512 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 453 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 452 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 393 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 392 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583217609537760