Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2006 277 2e-69 seq2331 114 1e-20 >seq2006 Length=20365 Score = 277 bits (306), Expect = 2e-69 Identities = 547/788 (69%), Gaps = 26/788 (3%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| | || ||| ||||||| ||| | || ||||| | |||||| | | || Sbjct 4520 CCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCATGTCGACGACCTGAAAAGCGTA 4461 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTT 53298 || ||||| |||||||| ||| | || | | ||| ||||||||||| || ||||| || Sbjct 4460 CGCGAGACCTACGACTTGATGT-CGAAGGGCTTCTTCACGCACGCCACCCCGACCCTCTT 4402 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 |||||| || ||| | || |||||| |||| ||||| |||| || |||||| Sbjct 4401 CAACGCCGGCACGCCGAAGCCGCAGATG---AGCTCGTGCTTCTTGGTCGCCTCGAAGGA 4345 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||| ||||||||||| ||||| ||||| |||||||| || |||| |||| | | Sbjct 4344 CGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCGGC 4285 Query 53416 GGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 || || || || | ||| ||| | ||| |||| | ||||| ||| || | Sbjct 4284 CGGCGGCATTGGCCTGCACGTGCAC-AACATCCGCTCCGCCGGCAGCTACATCGCCGGCA 4226 Query 53475 CGAACGGCGTCGCCGA-TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 |||||||| || ||| ||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 4225 CGAACGGCA-CGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCCCGC 4167 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| || || ||||||||||| | |||||| | ||||| ||||||||| Sbjct 4166 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGG 4107 Query 53594 CACGCCGACATTATGGAGTTTCTCG-AGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 ||||||||||| | | | |||| | |||| | || || | || || ||| Sbjct 4106 CACGCCGACATCTTCG-GCTTCTTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCG 4048 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 | ||||||||| ||| || ||||||| || ||||| |||||| ||| | ||| Sbjct 4047 CGCCCGTGACCTCTTTTACGCGTTGTGGATCCCAGACCTGTTCATG---AAGCGTGTGAA 3991 Query 53713 GGACGAGG---AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CT 53768 | ||||| ||||| |||||| |||| | ||||| || || || | | || Sbjct 3990 GAGCGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCT-GAGCGACTGCT 3932 Query 53769 ACGGTGAGGAGTTT-AACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAA 53826 |||| ||||||||| |||| |||| || || |||| |||||||| | | | Sbjct 3931 ACGGCGAGGAGTTTGAACG-CCTGTA-CGAGCGCTACGAGAAGGAGGGCCGCGGCGTGCA 3874 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || | || |||||| ||||| ||| || ||||| || ||| | |||||||| Sbjct 3873 GACGATCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCGCAGATCGAGACGGGCGT 3814 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGT 53946 ||| | ||| |||||||||| | |||| ||| |||||||||||| | ||| Sbjct 3813 GCCTTTCATCCTCTACAAGGATGCATGCAACAGCAAGTCGAACCAGAAGAACCTTGGCAC 3754 Query 53947 CATCAAAT 53954 ||||||| Sbjct 3753 GATCAAAT 3746 Score = 154 bits (170), Expect = 2e-32 Identities = 307/450 (68%), Gaps = 5/450 (1%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | ||||||||||| | ||||||| ||||| |||||||||||| | |||||| | Sbjct 3236 GGCATGCGCAACTCCCTCTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTC 3177 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||| |||||| |||||||| | ||| | ||||||||| | ||||| | | Sbjct 3176 GGCAATAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGT 3117 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGAT-CAACAAGTG 55656 || ||||| || | |||||| ||||||| | |||||| || || | | ||| Sbjct 3116 GGCGAGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCT-CATCCGACGCGGCCTGTG 3058 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA--G 55714 |||| | ||| | || || | || || ||| ||| || | || | Sbjct 3057 GAACGAGACGATGCGCAACGAGATCATCTCATACAACGGCTCCATCCTGACAATTGACGG 2998 Query 55715 ATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 ||| | || | |||||||| | ||||| || |||||||||||||||||| | || Sbjct 2997 CATCCCCGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGCAAGCT 2938 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 ||| |||||| || || || ||||||||||||||| ||||| ||||| | || Sbjct 2937 GATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCGCAGTCGTTGAACCTGTT 2878 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 | || ||| || | || | || | | ||||||| ||| ||| |||| || || Sbjct 2877 CCTGCAGAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTGCGG 2818 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||||||| ||||||| ||||| || Sbjct 2817 CCTCAAGACGGGCGTGTACTACCTGCGCAC 2788 >seq2331 Length=11698 Score = 114 bits (126), Expect = 1e-20 Identities = 242/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 151882 CCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACTCCGGC 151941 || |||||| | ||||||||| ||| | |||||||||||| || |||| | |||| Sbjct 9975 CCAATGCCCACCGCACCGTTGCACAGCAGCATCGGCACAATGGGCACGTAGTGATTCGGC 9916 Query 151942 TCCACCTGT-TGAC--CGTCATCCATCACGTATTTCAA-AACGGAATTGTCAGCCGGATC 151997 |||||| | || | | |||||||| || | || ||||| | ||| || | Sbjct 9915 TCCACCGGCGTGCCTTCCTCATCCATA---TAGTCCAGCAACGGG-TCGTCCTCCTCAGG 9860 Query 151998 GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGG-AGCTGGCCGCAT 152056 || || | || || | |||| | ||| |||||||| |||| ||| ||| | Sbjct 9859 AAAGATGAGCCGGGTGAAGCGACTGAGCTTCGTAAAGATGTAGCGGGGAGC-GGCGTGGT 9801 Query 152057 CCTTGCC-ACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 | ||||| | |||| |||||| || ||||| || ||| |||| ||||||| |||| Sbjct 9800 CGTTGCCCAGCTGCT-GCCGCGAGCCGAACTGGCCCTCCGGCACGAGCAGGTTGATGTTG 9742 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||||| ||| ||||| |||| ||||||||||| ||||||| | || ||| Sbjct 9741 TTGCCGCCCGTGAAGTTCTGCGCCATCTTCACAATCGTCTCCTGCAGCGACATCTCGCCG 9682 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 ||||| | |||| | ||| | |||||| || | | ||| |||||||| Sbjct 9681 TGGTGGAAGGCCGACACCTCGGAGATGTAGCCGGAGAGCTGGGCCACCTT 9632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547175478655200