Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2006 183 3e-41 seq3869 104 3e-17 seq3131 104 3e-17 seq3130 104 3e-17 seq5741 93.3 5e-14 >seq2006 Length=20365 Score = 183 bits (202), Expect = 3e-41 Identities = 844/1325 (64%), Gaps = 48/1325 (4%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||| | ||||| || |||||| || ||||||||||| | ||| ||| || |||||| Sbjct 3148 GTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATC 3207 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || | | ||| || || || |||| |||| || | | | | ||| || | ||| | Sbjct 3208 GGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCCTTCAGA-CTGTC 3266 Query 80515 CAAAAATCAACCCCAACGCTGT----------GACC--CCACATGTCGTGCTGCAAGATG 80562 | | || | | |||||| | | |||||||||| ||||| ||| Sbjct 3267 CCAGTCCCAGCGGC--CGCTGTTCGGGCGGGGGTTCTTCCACATGTCGAACTGCAGGATC 3324 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 |||| || ||| ||| ||| |||||||||||||||||| ||| |||| ||| Sbjct 3325 CCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTTCGCCATCTCC 3384 Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 |||| || | || ||| || ||| ||| || | | |||||| | || Sbjct 3385 ATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTTCACCCTCTGC 3444 Query 80683 GCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACG 80742 |||| || | |||| | || || || || ||||| | || ||||||||||| ||| Sbjct 3445 GCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAGGCCCTGCACG 3504 Query 80743 CCGATGGCGATCGGGCGGTGGCGCTTGTT----CGATCGCTCGGCCTCCGGAATTGGGTA 80798 || | | ||| ||||||| |||| |||| || ||| | | |||| | ||||| Sbjct 3505 CCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCG-GCGCGCCGTCTCC---ACCGGGTA 3560 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAAC---ATCATG 80855 |||| |||||||||||||||||||||||||| | | || || | | Sbjct 3561 GTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACGCTGTAGAG 3620 Query 80856 AAGTTTCTGA---AAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGC 80912 || | ||| | ||| | | | | ||||| || || || | || || Sbjct 3621 CAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCGATCGAGGC 3680 Query 80913 CAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATT 80972 || ||||||||||| ||| || | || |||| || || || ||||||| || Sbjct 3681 GAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCACAGGTT 3740 Query 80973 AGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTA 81032 || | || || || || ||||| |||||||| |||||| |||||| || |||||||| Sbjct 3741 CGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCATCCTTGTA 3800 Query 81033 GCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCG 81092 | ||| | || || ||||||| ||| |||| ||||| ||| ||| | ||| | Sbjct 3801 GAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACACCTCCTG 3860 Query 81093 CGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT--AAGCTTCGTCG 81150 ||||| || | || | ||| || | | || ||| | || | || Sbjct 3861 CGCCTGGATCGTCTGCACGCCGCGGCCCTCCTTCTCGTAGCGCTCGTACAGGCGT--TCA 3918 Query 81151 AACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209 |||| | |||| | || || | || | ||||| | | || |||||| ||| Sbjct 3919 AACTCCTCGCCGTAGCAG-TCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAGCGTCCA 3977 Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269 | | ||| ||| ||| ||||||||| ||| |||||||| | ||| || || Sbjct 3978 CTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACAACGCGTAAAAGAG 4037 Query 81270 GTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGAT 81329 ||| ||| |||| || || | || |||| | || | | ||| | | ||| Sbjct 4038 GTCACGGGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAAGAAGCCGAAGAT 4097 Query 81330 GTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTG 81386 ||| || ||||| ||||| || |||||||||| | |||||||| || ||| ||||| Sbjct 4098 GTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTG 4157 Query 81387 GTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTG 81446 || ||||| |||||||| ||| || || || | ||| || | | |||| ||| Sbjct 4158 GTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCCCATTCGACGT 4217 Query 81447 ACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGAT 81506 |||||||| || |||| || || ||| | ||| | || || || Sbjct 4218 GCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCAAT 4277 Query 81507 GCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCG 81564 ||| || | | ||| ||| ||| |||| || |||| || || ||||| || ||| Sbjct 4278 GCCGCCGGCCGCCTTGCTGATGACTGCGCACTCC--TTCAGCGTATCGTAAATGCCGTCG 4335 Query 81565 ATGCTATCTTTTTTCATGTCAAGCAAGAAAC---AGCTTGACATCTGAGGGCTTTTTGAG 81621 ||||| || | ||| | | | |||||| | |||| |||||| || | | | Sbjct 4336 ATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGGCTTCGGCGTG 4392 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 ||||| ||||| || || ||||| ||||| |||| | | || ||||||| ||| ||| Sbjct 4393 CCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACATCAAGTCGTAG 4452 Query 81682 GTTTC 81686 || || Sbjct 4453 GTCTC 4457 >seq3869 Length=3640 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 3159 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 3218 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 3219 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 3278 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 3279 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 3336 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 3337 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 3394 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 3395 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 3454 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 3455 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 3511 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 3512 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 3571 Query 65148 TGATTA 65153 || || Sbjct 3572 CGAGTA 3577 >seq3131 Length=4254 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 472 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 531 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 532 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 591 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 592 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 649 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 650 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 707 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 708 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 767 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 768 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 824 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 825 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 884 Query 65148 TGATTA 65153 || || Sbjct 885 CGAGTA 890 >seq3130 Length=3696 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 482 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 423 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 422 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 363 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 362 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 305 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 304 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 247 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 246 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 187 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 186 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 130 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 129 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 70 Query 65148 TGATTA 65153 || || Sbjct 69 CGAGTA 64 >seq5741 Length=29719 Score = 93.3 bits (102), Expect = 5e-14 Identities = 285/432 (66%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTC 32042 |||||||||||||| ||||||||| | | | |||||| ||||| ||||| ||| Sbjct 17198 GACGGCCTCAAGCCCGGCCAGCGCAAGATCCTCTTTGCCTGCTTCAAGCGCAACCTCGTC 17257 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | | ||| ||||||| |||||| | |||||||| || || || | ||||| ||||| Sbjct 17258 -AACGCCATCAAGGTGGTGCAGCTAGCCGGCTACGTCGCGGAACACTCCGCCTACCACCA 17316 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 |||||| ||||||| | || || || | | || ||| |||| ||||| | || Sbjct 17317 CGGCGACCAGTCGCTCGTGCAGACGATCGTGGGCATGGCGCAGGACTTCGTCGGCGGCAA 17376 Query 32163 TAACCTGAACTTACTCGAGC-CATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 ||| | || | | || | || ||||| || || || || || ||||||| Sbjct 17377 CAACGT-TCCTCTGTTGCGCAAAGACGGCCAGTTCGGCACACGTCTGCAGGGCGGCAAGG 17435 Query 32222 ---ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGAT 32276 | || ||| | || |||||||||||||| ||| ||| | || ||| || Sbjct 17436 ACCACGCCGCGGG---ACGGTACATCTTCACCCGACTCATGCAGGT--CACCCGCGCCAT 17490 Query 32277 TTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGA 32336 ||| ||||| | ||||| | | | ||| || ||||| | ||| || Sbjct 17491 CTTCCACCCGGCCGACGACTACATCGTGGAATACCGGGACGACGACGGCCTCTCGGTGGA 17550 Query 32337 GCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGG 32396 |||| | |||||| ||| ||| | |||||| | |||| ||||| | |||||||| Sbjct 17551 GCCGTTTTTCTACGTTCCTGTGATCCCGATGGTGCTGGTAAACGGCACCTCCGGCATCGG 17610 Query 32397 AACGGGGTTCAG 32408 || || ||||| Sbjct 17611 TACCGGCTTCAG 17622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268168514880