Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5662 122 8e-23 >seq5662 Length=28022 Score = 122 bits (134), Expect = 8e-23 Identities = 370/568 (65%), Gaps = 8/568 (1%) Strand=Plus/Plus Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACAT 6620 ||||| || || || || | || ||||||||||| || || || ||| || | | Sbjct 3315 GTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCG-CCT 3373 Query 6621 GAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCA 6680 ||||||| ||| ||||| | || |||||||| |||||||| || | |||| Sbjct 3374 TCGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCA 3433 Query 6681 TGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC-CCCATTCGCG-----ACGTAGA 6734 |||| | || || || || ||| ||| |||||||| | || | | ||||||| Sbjct 3434 TGTCGCAGGAACGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGA 3493 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACG 6794 | |||| || |||||| || || || |||||| | | | ||||||||||| Sbjct 3494 ACTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGGTTCAACGCGCACGGGTTCCACG 3553 Query 6795 CGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCA 6854 || | | |||| | ||| | |||||| | | | || || | | ||| | Sbjct 3554 CGGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCCCTGAGCGTCTCCACAATCGACTTGA 3613 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 ||| ||| | || | ||| |||| || |||| |||| ||| | || || |||| Sbjct 3614 TCTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGT 3673 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974 | | ||||||||| |||||||| ||||| | ||| |||| | || || | Sbjct 3674 GACGCCACTGGAAGCCGTAGACGGGGCCGAGGTCCATTTCCTTGTTTTCCGTCAAACCGC 3733 Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034 | |||| || || | || || ||| ||||||| || | | || | || | Sbjct 3734 GGCTGTCGAGGAACGCGCGTGAGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCA 3793 Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094 || || | |||||| |||| | || |||||||||||||||||| |||||| || Sbjct 3794 GCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCACAGCAGCTCCTCACACACGCCACGCC 3853 Query 7095 AGTACACACGTTTCGTCGTCAGCAGCGG 7122 || | ||||| |||||||||||||| || Sbjct 3854 AGAAGACACGCTTCGTCGTCAGCAGGGG 3881 Score = 122 bits (134), Expect = 8e-23 Identities = 370/568 (65%), Gaps = 8/568 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || |||||||||||||| ||||| | |||| |||||| |||||||||||||||||| Sbjct 3881 CCCCTGCTGACGACGAAGCGTGTCTTCTGGCGTGGCGTGTGTGAGGAGCTGCTGTGGTTC 3822 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | |||| |||||| | || ||| || | || | | || ||||||| Sbjct 3821 TTGCGTGGGGAGACGAACGCGCAGCTGCTGGCGGACAAGGACATTCATATTTGGGACGGC 3762 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 ||| || || | || || |||| || || || | |||| ||| | Sbjct 3761 AACGCCTCACGCGCGTTCCTCGACAGCCGCGGTTTGACGGAAAACAAGGAAATGGACCTC 3702 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| |||||||| ||||||||| | ||||| || || | ||| |||| |||| || Sbjct 3701 GGCCCCGTCTACGGCTTCCAGTGGCGTCACTTCGGCGCCGCGTACAGGGGCTGCGACGCA 3642 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 |||| ||| | || | ||| ||| | ||| | | || || | | | |||| Sbjct 3641 AACTACGACGGAGAAGGCGTGGATCAGATCAAGTCGATTGTGGAGACGCTCAGGGCGAAC 3582 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | ||| | |||| | | ||||||||||||| | | | |||||| Sbjct 3581 CCAAACGACCGCCGGATGCTCTTCACCGCGTGGAACCCGTGCGCGTTGAACCAGATGGCC 3522 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-----CGCGAATGGG-GAGCTGTCC 34636 || || || |||||| || |||| |||||||| | | || | |||||||| Sbjct 3521 CTGCCGCCCTGCCACCTACTTGGCCAGTTCTACGTGAACACACAAACGAAAGAGCTGTCG 3462 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||| ||| || || || || | |||||||| | || |||||||| |||||||| Sbjct 3461 TGCATGCTGTACCAGCGTTCCTGCGACATGGGCCTCGGCGTGCCGTTTAACATTGCCTCG 3402 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGT 34755 || | ||||| ||| ||||||| | | || ||| || || || |||||||| Sbjct 3401 TATTCGCTGCTGACGATTTTGATCGCGAAGG-CGACAGGTCTGCGACCGGGTGAGCTGGT 3343 Query 34756 GCATACGTTGGGGGATGCGCATATCTAC 34783 ||| || | || || || || ||||| Sbjct 3342 GCACACACTCGGTGACGCACACGTCTAC 3315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448229206169280