Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5662 122 6e-23 >seq5662 Length=28022 Score = 122 bits (134), Expect = 6e-23 Identities = 399/608 (66%), Gaps = 24/608 (4%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| |||||||| ||||| || ||||||||| ||||| || || ||||| Sbjct 3283 AGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGC 3342 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 || | ||| |||||| || || || | | || |||| ||| || || || || Sbjct 3343 ACCAGCTCACCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATAC 3402 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||| |||||||| || || ||||| |||||||| | || | |||||| ||| ||| Sbjct 3403 GAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAGGAACGCTGGTACAGCATGCAC 3462 Query 27310 GAGAGCTCTCCATCGCTT--------ACGTAAAACTGACATATGGCGTGGCACGGAGGAA 27361 || |||||| ||| || ||||| ||||| | | |||||| || || | Sbjct 3463 GACAGCTCTT--TCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCA 3520 Query 27362 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 27421 | ||||| || ||| | |||||||| ||| | || || || | ||| | || Sbjct 3521 GGGCCATCTGGTTCAACGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTG 3580 Query 27422 GGTTGTTCCTGATGAGGTCCACGG-CGTTTTGCAGCTGATCCACCCCCATCCCCGA-GTA 27479 |||| ||||| ||||| || ||| | ||||||||| || || ||| ||| Sbjct 3581 GGTTCGCCCTGAGCGTCTCCACAATCGACTTG-ATCTGATCCACGCCT-TCTCCGTCGTA 3638 Query 27480 GTCTACC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCG 27538 || | | | || | || ||||| | || ||||| || | ||| ||||| ||||| || | Sbjct 3639 GTTTGCGTCGCA-GCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGG 3697 Query 27539 GTCCCAGGTCTCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGG 27595 | || ||||| | |||| ||| || || || | |||| | || | | | Sbjct 3698 GGCCGAGGTC---CATTTCCTTGTTTTCCGTCAAACCGCGGCTGTCGAGGAACGCGCGTG 3754 Query 27596 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 27655 | ||||| ||||||| || | | |||| || | ||| | | ||| || || Sbjct 3755 AGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCC 3814 Query 27656 CTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 27714 | | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||||| Sbjct 3815 CACGCAAGAACCACAGCAGCTCCTCACAC-ACGCCACGCCAGAAGACACGCTTCGTCGTC 3873 Query 27715 AGGAGGGG 27722 || ||||| Sbjct 3874 AGCAGGGG 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480522042044