Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3869 96.9 7e-15 seq3131 96.9 7e-15 seq3130 96.9 7e-15 seq2331 95.1 3e-14 seq5741 87.8 4e-12 >seq3869 Length=3640 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 3375 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 3434 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 3435 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 3494 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 3495 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 3554 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 3555 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 3587 >seq3131 Length=4254 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 688 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 747 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 748 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 807 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 808 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 867 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 868 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 900 >seq3130 Length=3696 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 266 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 207 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 206 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 147 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 146 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 87 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 86 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 54 >seq2331 Length=11698 Score = 95.1 bits (104), Expect = 3e-14 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || ||||| || ||||| | || | || ||||| ||||| ||| ||| ||| || Sbjct 9834 AGCTTCGTAAAGATGTAGCGGGGAGCGGCGTGGTCGTTGCCCAGCTGCTGCCGCGAGCCG 9775 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||| ||| ||| |||||||||| || | | | ||| ||||| Sbjct 9774 AACTGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCCGTGAAGTTCTGCGCCATC 9715 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||| || ||| |||| || || | |||||||||||| |||| |||| ||| Sbjct 9714 TTCACAATCGTCTCCTGCAGCGACATCTCGCCGTGGTGGAAGGCCGACACCTCGGAGATG 9655 Query 273954 TAACCACTGAACTGAGCAACCTT---CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAA 274010 || || || ||| || ||||| | | ||||| | ||| ||||| | | Sbjct 9654 TAGCCGGAGAGCTGGGCCACCTTGGCCGCCTCGCTACT---GTTACGCTTCAGCATCGCC 9598 Query 274011 TACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 ||| | ||| |||||||| ||||| | ||| || ||| Sbjct 9597 CACAGGATCTTGCGCTGCGACGGCTTTAGCCCGTCCACG 9559 >seq5741 Length=29719 Score = 87.8 bits (96), Expect = 4e-12 Identities = 226/339 (67%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 ||||| ||||||| | | | || | ||||||||||| || ||||| | | || ||||| Sbjct 17463 GTGAAGATGTACC-GTCCCGCGGCGTGGTCCTTGCCGCCCTGCAGACGTGTGCCGAACTG 17405 Query 273839 ACCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || || | ||| || || | |||||||| |||||| | ||||| ||||| Sbjct 17404 GCCGTCTTTGCGCAACAG--AGGA-ACGTTGTTGCCGCCGACGAAGTCCTGCGCCATGCC 17348 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 |||||| ||| | || || ||||||||||| |||||| |||||| |||| || Sbjct 17347 CACGATCGTCTGCACGAGCGACTGGTCGCCGTGGTGGTAGGCGGAGTGTTCCGCGACGTA 17288 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAA 274015 || | ||| | ||||| | || | | ||| |||||||| || | | | Sbjct 17287 GCCGGCTAGCTGCACCACCTTGATGGCGTTGACGAGGTTGCGCTTGAAGCAGGCAAAGAG 17228 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATC 274075 | ||| ||||| |||||||| || |||| | || || ||||| || |||| Sbjct 17227 GATCTTGCGCTGGCCGGGCTTGAGGCCGTCAATTGCGCTGGGGATGCTGCGCTCGCAATC 17168 Query 274076 ATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 |||||| | |||||| |||||||| | |||||| Sbjct 17167 CGCAATAGAGAAAAGAATCAGCTCCTTGTCCACGAAGTC 17129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046659751186296