Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5671 105 1e-17 seq4524 105 1e-17 seq3161 105 1e-17 seq3160 105 1e-17 >seq5671 Length=8019 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || |||| Sbjct 7754 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 7813 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 7814 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 7873 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | || || | || |||||| | || ||||| || || ||||| |||||| Sbjct 7874 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 7933 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || ||||||| | | || ||||||| Sbjct 7934 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCCGGCGTGATGA 7976 >seq4524 Length=6481 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || |||| Sbjct 5794 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 5735 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 5734 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 5675 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | || || | || |||||| | || ||||| || || ||||| |||||| Sbjct 5674 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 5615 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || ||||||| | | || ||||||| Sbjct 5614 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCCGGCGTGATGA 5572 >seq3161 Length=4752 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || |||| Sbjct 688 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 747 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 748 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 807 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | || || | || |||||| | || ||||| || || ||||| |||||| Sbjct 808 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 867 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || ||||||| | | || ||||||| Sbjct 868 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCCGGCGTGATGA 910 >seq3160 Length=11589 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || |||| Sbjct 266 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 207 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 206 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 147 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | || || | || |||||| | || ||||| || || ||||| |||||| Sbjct 146 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 87 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || ||||||| | | || ||||||| Sbjct 86 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCCGGCGTGATGA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057742286732270