Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3452 87.8 2e-12 seq3280 82.4 6e-11 >seq3452 Length=20065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/133 (77%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGC-AACCACATCATCATGCTGGAGCCGCACT 38786 ||||||| | || | |||||| | |||||| |||||| ||||||| || | ||| Sbjct 13142 CGGCGGCCTCGGCATCAACCTG-CAGGCGGCTAACCACGTCATCATCTACGACTCCGACT 13084 Query 38787 GGAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGC 38846 |||||||||| || || ||||||||||| |||||| ||||||||| || | |||||| Sbjct 13083 GGAACCCGCAGATGGACCTGCAGGCGCAGGACCGCGCCCACCGCATCGG---GCAAAAGC 13027 Query 38847 GCA-CGTACGTGT 38858 ||| ||| || || Sbjct 13026 GCAGCGTTCGCGT 13014 >seq3280 Length=34181 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 38715 TGTCCATCAAGTGCGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGC 38774 |||||| | | ||||||||||||||||||||||||||||| | || |||| | Sbjct 28316 TGTCCACCCGCTCCGGCGGCGTGGGGCTGAACCTGACCGGCGCCGACACGGTCATTTTCT 28375 Query 38775 TGGAGCCGC-ACTGGAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATG 38833 || | || | ||||||||| || || ||||||||||| |||||| ||||||||| Sbjct 28376 ACGA-CAGCGATTGGAACCCGACGATGGATCTGCAGGCGCAGGACCGCTGCCACCGCATC 28434 Query 38834 GGCCAGA 38840 || |||| Sbjct 28435 GGGCAGA 28441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422228173053764