Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5671 122 2e-22 seq4524 122 2e-22 seq3161 122 2e-22 seq3160 122 2e-22 >seq5671 Length=8019 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 7971 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 7913 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 7912 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 7855 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 7854 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 7796 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 7795 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 7738 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 7737 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 7678 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 7677 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 7621 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 7620 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 7564 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 7563 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 7508 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 7507 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 7448 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 7447 CGTCTGGAT 7439 >seq4524 Length=6481 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 5577 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 5635 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 5636 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 5693 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 5694 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 5752 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 5753 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 5810 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 5811 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 5870 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 5871 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 5927 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 5928 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 5984 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 5985 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 6040 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 6041 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 6100 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 6101 CGTCTGGAT 6109 >seq3161 Length=4752 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 905 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 847 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 846 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 789 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 788 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 730 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 729 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 672 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 671 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 612 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 611 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 555 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 554 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 498 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 497 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 442 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 441 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 382 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 381 CGTCTGGAT 373 >seq3160 Length=11589 Score = 122 bits (134), Expect = 2e-22 Identities = 370/549 (67%), Gaps = 32/549 (6%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 || |||| ||| ||| |||||| |||| | ||||| || ||||| ||||| ||||| || Sbjct 49 ACGCCGGCCTT-CTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAG 107 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTGGCG-CA-GTTGTACACCTTGTCGTACCCC 157360 || ||||| ||||| | ||||| || | ||| || |||||| ||| || |||| Sbjct 108 CGAGATCATCTCCATGAAGTCGAACGGCT--GCGTCACGTTGTAGTGCTTCTCCAGCCCC 165 Query 157361 AGCTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 ||| | | || ||| | |||||||| |||| |||||||| | ||| | | || | Sbjct 166 AGC-GATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTT 224 Query 157420 GATACCGATGAG-CGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACA 157477 || ||||| || ||| || || ||||| | || | ||||| |||| ||| | | | || Sbjct 225 CATGCCGATCAGTCGC-ACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACC 282 Query 157478 GCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTG 157534 |||| || || || | || | ||| ||||||||| | | ||||| ||| ||| Sbjct 283 GCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGTGTTG 342 Query 157535 TAGATGAGA-ACGGAAG--CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTC 157591 || | || ||| || ||||| || || || ||||| | | ||| || ||| Sbjct 343 TACAGCAGGCACGCAAAGTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTG 399 Query 157592 GCGAACGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAAC 157648 ||||| || ||| | | || ||| |||||||||||||| | | ||||||||| Sbjct 400 CTGAACGTCAG-CCCAGGCA--TCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAAC 456 Query 157649 GACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAA 157708 ||||| ||| | |||||||| | |||||||| |||| |||| ||| Sbjct 457 GACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCC----TGGAA 512 Query 157709 GC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCAT 157767 || | | || | |||||| | | ||||| |||||||| | |||| || || Sbjct 513 GCTCGCTCCGCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGAT 572 Query 157768 CGTCTGGAT 157776 ||||||||| Sbjct 573 CGTCTGGAT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073683455236672