Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5505 149 5e-31 >seq5505 Length=14715 Score = 149 bits (164), Expect = 5e-31 Identities = 383/573 (67%), Gaps = 28/573 (5%) Strand=Plus/Minus Query 20776 CTCAAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGAT 20835 ||||||||||||||||||||| || | || | || | ||| || | | || | Sbjct 14259 CTCAAACGGCCATCTCCATCTTGATAGGCGGGTACGGAACATAGTCCACCACCTCCATGT 14200 Query 20836 CCG-CG-CGCGTAAAGTCCTCCAG--ACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGA 20891 ||| || | ||||| |||||||| | ||| | |||| || | |||| |||| Sbjct 14199 CCGTCGACTCGTAA--TCCTCCAGGAAGTCGCGCTCCTTCTTGAA--CACCAGCACCGGA 14144 Query 20892 AACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACG 20951 |||| |||||| | ||||||||| | ||| | || || || || |||| ||| Sbjct 14143 AACGCACGCGGCACACGCCGCAGCTGCTCCTTCAGCGCCTCCACATGCGTGCTGTAGACG 14084 Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011 || |||||||| | |||||||| | || ||||| ||| || || | | |||||| Sbjct 14083 TGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCGCCTTCGCGATC 14024 Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071 | | |||||| || | || ||| ||||||||||| || ||||||||||||||| | Sbjct 14023 AAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCATGTCGCAG 13964 Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTC---CCCCCGAG---CCACGTAAAACTGACAC 21125 || | |||||||||| ||| |||||||| | | | |||||| ||||| | Sbjct 13963 GAACGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGAACTGGCCA 13904 Query 21126 AAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC--CGCG---GGGTTCCACGCGC 21180 | | ||| || || || || |||||| | | || |||| |||||||||||| Sbjct 13903 AGTAGGTGGCAGGGCGGCAGGGCCATCTG-----GTTCAACGCGCACGGGTTCCACGCGG 13849 Query 21181 ACATAACGATGCGCCGATCG--TGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 | | || || || ||| |||| |||| | | ||||| | | | Sbjct 13848 TGAAGAGCATCCGGCGGTCGTTTGGGTTCGCC--CTGAGCGTCTCCACAATCGACTTGAT 13791 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||| ||||| || | || |||||||| |||||| ||||||||| | || || || || Sbjct 13790 CTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGTG 13731 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | ||||||||| ||||| || || || || || Sbjct 13730 ACGCCACTGGAAGCCGTAGACGGGGCCGAGGTC 13698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427744567687920